View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1459_low_69 (Length: 344)
Name: NF1459_low_69
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_69 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 2999296 - 2999614
Alignment:
| Q |
19 |
taataaaaattgattttgagtttcaaatgtctgnnnnnnnnnnnncttttcaagatcaattgttttttaaaaatgagatcatcatataaagtattagagt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2999296 |
taataaaaattgattttgagtttcaaatgtctgttttttttttttttttgcaagatcaattgtttcttaaaaatgagatcatcatataaagtattagagt |
2999395 |
T |
|
| Q |
119 |
aaatatgattaagtgattaaactcaaac-attgataagatgtagttaaaaatgaattgtttgaaaaacatgaatttgagttctaattgaacaatccctaa |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
2999396 |
aaatatgattaaatgattaaactcaaacgattgataagatgtagttaaaattgaattttttgaaaaacatgaatttaagttataattgaacaatccctaa |
2999495 |
T |
|
| Q |
218 |
tcacacattataattaccactttatcaaactttggattatcggaccatttttcttagactcaggttaaagacttcagacnnnnnnnnntatcgatctcta |
317 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
2999496 |
tcgcacaatataattaccactttatcaaactttggattatcagaccatttttcttagactcgggttaaagacttcagacaaaaaaaaatattgatctcta |
2999595 |
T |
|
| Q |
318 |
aattattaatatattcttc |
336 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
2999596 |
aattattaatatatccttc |
2999614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University