View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_71 (Length: 341)
Name: NF1459_low_71
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 26126039 - 26126332
Alignment:
| Q |
18 |
aaaagacttgttaataaagatttagaaatactcatatccatagttcttttagcagcatgnnnnnnnnnccattaactcgtctcaatgccacagtcaattc |
117 |
Q |
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| T |
26126039 |
aaaagactcgttaataa-gatttagaaatactcatatccatagttcttttagcagcatgaaaaaaaaaccattaactcgtctcaatgtcacaatcaattc |
26126137 |
T |
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| Q |
118 |
ttgatccatgcaatctccatctcctaaatcgttaccaaatctcaattattcttgctaacactgtgtttacgaggatgagataaaaacaccttaaaaaatt |
217 |
Q |
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| T |
26126138 |
ttgatccatggaatctccatctcctaaatcgttactaaatctcaattattcttgctaacaatgtgtttacgaggatgagataaaaacaccttaaaatatt |
26126237 |
T |
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| Q |
218 |
aaatttgcatacaacaaacattatagtgtgattatagtgtgaaaatgagtgcaaaagcataagtatgggtgctcgttaagtttttgaagaacaactaaga |
317 |
Q |
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| T |
26126238 |
aaattagcatacaacaaac-----------attatagtgtgaaaatgagtgtaaaagcataagtataggtgctcgttaagtatttgaagaacaactaaga |
26126326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 26083852 - 26084010
Alignment:
| Q |
90 |
taactcgtctcaatgccacagtcaattcttgatccatgcaatctccatctcctaaatcgttaccaaatctcaattatt---------cttgctaacactg |
180 |
Q |
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| T |
26083852 |
taactcgtatcaatgtcacggtcaactctggatccatgaaatttccatctcctgaattgttactagatcttaattatgttgtagtggcttgctaacactg |
26083951 |
T |
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| Q |
181 |
tgtttacgaggatgagataaaaacaccttaaaaaattaaatttgcatacaacaaacatt |
239 |
Q |
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| T |
26083952 |
tgtttatgaggatgagataaaaacaacttaaaacattaaattagcatacaacaaacatt |
26084010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 26075374 - 26075455
Alignment:
| Q |
168 |
cttgctaacactgtgtttacgaggatgagataaaaacacctt-aaaaaattaaatttgcatacaacaaacattatagtgtga |
248 |
Q |
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| T |
26075374 |
cttgctaacaatgtgtttatgagaataagataaaaacaccttaaaaaaattaaattagaatacaacaaacattatagtgtga |
26075455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 319
Target Start/End: Original strand, 26119603 - 26119674
Alignment:
| Q |
248 |
attatagtgtgaaaatgagtgcaaaagcataagtatgggtgctcgttaagtttttgaagaacaactaagaca |
319 |
Q |
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| T |
26119603 |
attatagtgtgaaaatgagggtaaaagcataagtataggtgctcgttaagtttttgaacaacagcttagaca |
26119674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 319
Target Start/End: Original strand, 26084038 - 26084109
Alignment:
| Q |
248 |
attatagtgtgaaaatgagtgcaaaagcataagtatgggtgctcgttaagtttttgaagaacaactaagaca |
319 |
Q |
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| T |
26084038 |
attatagtgtgaaaatgagggtaaaagcataagtatacatgctggttaagttttagaacaacaactaagaca |
26084109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 26096312 - 26096386
Alignment:
| Q |
248 |
attatagtgtgaaaatgagtgcaaaagcataagtatgggtgctcg-ttaagtttttgaagaacaactaagacaca |
321 |
Q |
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| T |
26096312 |
attatagtgtgaaaatgagggtaaaagcataagtataggtgcttgctaaagtttttgaacaacaacttagacaca |
26096386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 26119520 - 26119559
Alignment:
| Q |
168 |
cttgctaacactgtgtttacgaggatgagataaaaacacc |
207 |
Q |
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| T |
26119520 |
cttgctaacaatgtgtttatgaggatgagataaaaacacc |
26119559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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