View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_72 (Length: 341)
Name: NF1459_low_72
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_72 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 67 - 314
Target Start/End: Complemental strand, 27770930 - 27770683
Alignment:
| Q |
67 |
ttcttatctgtatttttcttttaaatatgtatatgttatttatgcaatttggatccctgaattaatgggatcaagattctttgcaggaaggatatcttga |
166 |
Q |
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| T |
27770930 |
ttcttatctgtatttttcttttaaatatgtatatgttatttatgcaatttggatccctgaattaatgggatcaagattctttgcaggaaggatatcttga |
27770831 |
T |
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| Q |
167 |
attcatttattcaagatatagttgatagttgggcggtttagatattaagtttggtaatttagatttt-acaagaaagtttaaatttgcatttttataaag |
265 |
Q |
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| T |
27770830 |
attcatttattcaagatatagttgatagttgggcggtttagataataagtttggtaatttagattttaaaaagaaaattaaaatttgcatttttgaaaag |
27770731 |
T |
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| Q |
266 |
tgtcctatcaaatttaactcccaccattcaccaatgcattcagtgcgtg |
314 |
Q |
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| T |
27770730 |
tgtcctatcaaatttaactctcaccattcaccaatgc-ttcagtgcgtg |
27770683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7989331 - 7989275
Alignment:
| Q |
1 |
ttatttttataccagatgaaaaacaggcatcatatgtcaaacttacaacacttgctg |
57 |
Q |
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| T |
7989331 |
ttatttttataccagatgaaaaacaggcatcatatgtcaaacttacaacacttgctg |
7989275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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