View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1459_low_74 (Length: 330)
Name: NF1459_low_74
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_74 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 33654621 - 33654325
Alignment:
| Q |
8 |
cgaagaatattacaagattannnnnnncaaaatttattaaattcccgtattaaaaatatttggaaaattaaactgaaaagggggaggtgcatcttannnn |
107 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33654621 |
cgaagaatattacaagattatttttttcaaaatttattaaattcccctattaaaaatatttggaaaattaaactgaaaagggggaggtgcatcttatttt |
33654522 |
T |
|
| Q |
108 |
nnnaatcaatgttcatgcactattctactatatatataaactataggttagtgaacaatcatcacacacacaaacatgattttcattattcccatgtcaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33654521 |
ttttatcaatgttcatgcactattctactatata----aactataggttagtgaacaatcatcacacacacaaacatgattttcattattcccatgtcaa |
33654426 |
T |
|
| Q |
208 |
ctaagaaacgccgagatatggtgaataaattacgcaagcttgagaaggttgtggtgtgcaagaacaaaaattggagaattgatgatgatgaggtgaaaag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33654425 |
ctaagaaacgccgagatatggtgaataaattacgcaagcttgagaaagttgtggtgtgcaagaacaaaaattggagaattgatgatgatgaggtgaaaag |
33654326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University