View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_77 (Length: 324)
Name: NF1459_low_77
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_77 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 51 - 321
Target Start/End: Complemental strand, 44000692 - 44000418
Alignment:
| Q |
51 |
gctcaccgcttggtattcaattccttatcctgtaactgtgtgtggatatacnnnnnnn----gtaatgcatggaataagatttctgctttatgttttgtt |
146 |
Q |
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| T |
44000692 |
gctcaccgcttggtattcaattccttatcctgtaactgtgtgtggatatactttttttttttgtaatgcatggaataagatttctgctttatgttttgtt |
44000593 |
T |
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| Q |
147 |
tcacctcaggaagaaaatctgaagggttgataaacacaaacagatttagcactgctgcagctgttcaggaattgattactccacaagtttcaataaatta |
246 |
Q |
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| T |
44000592 |
tcacctcaggaagaaaatctgaagggttgataaacacaaacagatttagcactgctgcagctgttcaggaattgattactccacaagtttcaataaatta |
44000493 |
T |
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| Q |
247 |
tacacagcatcttataaatggaaagtttgtggatgctgcatcaggtaatgtttaaagatcgttgcttgttactcc |
321 |
Q |
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| T |
44000492 |
tacacagcatcttataaatggaaagtttgtggatgctgcatcaggtaatgtttaaagatcgttgcttgttactcc |
44000418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 110 - 317
Target Start/End: Original strand, 5572465 - 5572672
Alignment:
| Q |
110 |
taatgcatggaataagatttctgctttatgttttgtttcacctcaggaagaaaatctgaagggttgataaacacaaacagatttagcactgctgcagctg |
209 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
5572465 |
taatgcatggaataagatttctggtttatgttttgttttacctcaggaagaaaa-ctgaagggttgataaacacaaacagatttagcaatgctacagctg |
5572563 |
T |
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| Q |
210 |
ttcaggaattgattactccacaagtttcaataaattatacacagcatcttataaatggaaagtttgtggatgctgcatcaggtaatgtttaaagatcg-t |
308 |
Q |
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| T |
5572564 |
ttgaggaattgattactccataagtttcaatgaactatacacaacatcttataaatggaaaatttgtggatgatgcatcaggtaatgtataaagattgtt |
5572663 |
T |
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| Q |
309 |
tgcttgtta |
317 |
Q |
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| T |
5572664 |
tgcttgtta |
5572672 |
T |
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