View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_78 (Length: 321)
Name: NF1459_low_78
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 35373459 - 35373158
Alignment:
| Q |
1 |
tatataaattcaaatataaatattgtgttagtatcacaaacaatcaaaccaacttatgaataaacatattgaacattcatagctcacgttcatttcattt |
100 |
Q |
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| T |
35373459 |
tatataaatttaaatataaatattttgttagtatcacaaacaatcaaaccaacttatgaataaacaagtcgaacattcatagctcacgtttatttcattt |
35373360 |
T |
|
| Q |
101 |
agttaattatagacttagttttcaacttgtgtttagattatttagttcacgaacattcaacaaattaattaccgaacgcgtctcaaattatattagagcc |
200 |
Q |
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| T |
35373359 |
agttaattatagacttagttttcaacttgtgtttaggttatttagttcacgaacgttcaacaaattaattaccgaacgcttctcaaattatattagagcc |
35373260 |
T |
|
| Q |
201 |
aattacattagaaccaacacactgaaaaatggtnnnnnnnnnntgtgtggatttccaccacatgtcatttgcagannnnnnnaataattaaaatagacta |
300 |
Q |
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| T |
35373259 |
aattacattagagccaacacactgaaaaatggt-aaaaaaatatgtgtggatttccaccacatgtcatttgcagatttttttaataattaaaatagacta |
35373161 |
T |
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| Q |
301 |
ata |
303 |
Q |
| |
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||| |
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| T |
35373160 |
ata |
35373158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 35370151 - 35369986
Alignment:
| Q |
32 |
tatcacaaacaatcaaaccaacttatgaataaacatattgaacattcatagctcacgttcatttcatttagttaattatagacttagttttcaacttgtg |
131 |
Q |
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|||||||||||||||||||||||| |||||||||| | |||||||||| ||||| ||||| | ||||||| ||||||| |||| |||||||| |
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| T |
35370151 |
tatcacaaacaatcaaaccaacttctgaataaacaagtcgaacattcattgctcatattcatct-----agttaat---agacttaatttttaacttgtg |
35370060 |
T |
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| Q |
132 |
tttagattatttagttcacgaac---attcaacaaattaattaccgaacgcgtctcaaattatattagagccaa |
202 |
Q |
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| T |
35370059 |
tttaggtcatttagttcacgaactaacttcaacgaatcaattaccgaacgagtctaaaactatattggagccaa |
35369986 |
T |
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