View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_89 (Length: 300)
Name: NF1459_low_89
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_89 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 6 - 284
Target Start/End: Original strand, 21069973 - 21070251
Alignment:
| Q |
6 |
gagagatgaagcaatgattttgccaacacaaaaaggattgttgtgctagtagtaacaaatcttcatcaccaccaacaaaaagcaatatattttcagccat |
105 |
Q |
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| T |
21069973 |
gagagaagaagcaatgattttgccaacacaaaagggattgttgtgctagtagtaacaaatcttcatcaccaccaacaaaaagcaatatattttcagccat |
21070072 |
T |
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| Q |
106 |
caagatctagcatttcacaagtgaaaggtttcgaaaacagagcaccaccttatgttcttgttgaagaagaaacaacgaaggaagtgttgtcaaaaacacc |
205 |
Q |
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| T |
21070073 |
caagatctagcatttcacaagtgaaaggtttcgaaaacagagcaccaccttatgttcttgttgaagaagaaacaacgaaggaagtgttgtcaaaaacacc |
21070172 |
T |
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| Q |
206 |
caaatggaagaaaccaaatgatcaaatatgcaagcatcaccaattatcttcaggaaattggcttctggcttcttcttca |
284 |
Q |
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| T |
21070173 |
caaatggaagaaaccaaatgatcaaatatgcaagcatcaccaattatcttcaggaaattggcttctggcttcttcttca |
21070251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 21080140 - 21080189
Alignment:
| Q |
235 |
gcaagcatcaccaattatcttcaggaaattggcttctggcttcttcttca |
284 |
Q |
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| T |
21080140 |
gcaagcatcaccaattatcttcaggaaattggcttctggcttcttcttca |
21080189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 3274022 - 3274154
Alignment:
| Q |
94 |
attttcagccatcaagatctagcatttcacaagtgaaaggtttcgaaaacagagcaccaccttatgttcttgttgaagaagaaacaacgaaggaagtgtt |
193 |
Q |
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| T |
3274022 |
attttcaaccatcaagatctagcatttcacaagtgaaaggttctgaaaacagagcaccaccttgtgttcctgttgaagaagaaacagttaaggaagtgtt |
3274121 |
T |
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| Q |
194 |
gtcaaaaacacccaaatggaagaaaccaaatga |
226 |
Q |
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| T |
3274122 |
gtcagaaacacccaagtggaagaaaccaaatga |
3274154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 3273964 - 3274015
Alignment:
| Q |
23 |
ttttgccaacacaaaaaggattgttgtgctagtagtaacaaatcttcatcac |
74 |
Q |
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| T |
3273964 |
ttttaccaacacaaaatgggttgttgtgctagtagtaacagatcttcatcac |
3274015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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