View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_90 (Length: 299)
Name: NF1459_low_90
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_90 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 38074095 - 38073811
Alignment:
| Q |
1 |
actatcaattccaaaataaacctttctatcattttatttttctatttgttgggaatttccatacttctcaacattttacaataagcttatgaatctgcca |
100 |
Q |
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| T |
38074095 |
actatcaattccaaaataaacctttctatcattttatttttctatttgttgggaatttccatacttctcaacattttacaataagcttatgaatctgcca |
38073996 |
T |
|
| Q |
101 |
ctgctaatctataagcattcattcattcctttcttaagtatgagtataaattaaaagtacacatataaaagataactatcattgagaaataacaaagcag |
200 |
Q |
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| T |
38073995 |
ctgctaatctataagcattcattcattcctttcttaagtatgagtataaattaaaagtacacatataaaagataactatcattgagaaataacaaagcag |
38073896 |
T |
|
| Q |
201 |
cttgtattttattactatgaccttttgagctccaagatattctatttgcgtcccttggacacatgagaaggtatactttgttcat |
285 |
Q |
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| T |
38073895 |
cttgtattttattactatgaccttttgagctccaagaaattctatttgcgtcccttggacacatgagaaggtatactttgttcat |
38073811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 285
Target Start/End: Complemental strand, 38087419 - 38087321
Alignment:
| Q |
187 |
aaataacaaagcagcttgtattttattactatgaccttttgagctccaagatattctatttgcgtcccttggacacatgagaaggtatactttgttcat |
285 |
Q |
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| T |
38087419 |
aaataacaaagcagctactattttatcattatgacctatgccactccagaaaactctatttgcgtcccttggacacatgagaaggtatactttgttcat |
38087321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 38082935 - 38082893
Alignment:
| Q |
243 |
tatttgcgtcccttggacacatgagaaggtatactttgttcat |
285 |
Q |
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| T |
38082935 |
tatttgtgtcccttggacacaagagaaggtatactttgttcat |
38082893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 38060931 - 38060977
Alignment:
| Q |
239 |
attctatttgcgtcccttggacacatgagaaggtatactttgttcat |
285 |
Q |
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||||||| || |||||||||||| ||| ||||||||||||||||||| |
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| T |
38060931 |
attctatctgtgtcccttggacaaatgtgaaggtatactttgttcat |
38060977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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