View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_91 (Length: 297)
Name: NF1459_low_91
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_91 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 14985306 - 14985033
Alignment:
| Q |
9 |
ttcaatagatagcacaacactgttcttgttgacacagttgactactcccagtgcatcactaattacttccacactttggataccttgagctgttgcatat |
108 |
Q |
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| T |
14985306 |
ttcaatagatatcacaacactgttcttgttgacacaattgactactcccagtgcatcactatttacttccacactttggataccttgagctgttgcatat |
14985207 |
T |
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| Q |
109 |
tgtaaagcccacctaactcccattgcttctgccagcattggatcaacgtgaatatccctgcctggttttttagaaccatcccccaaccattttgtccatt |
208 |
Q |
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| T |
14985206 |
tataaggcccacctaactcccattgcttctgccagcattggatcaacgtgaatatccctgcctggttttttagaaccatcccccaaccattttgtccatt |
14985107 |
T |
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| Q |
209 |
agggaaacaacctacgtcaaccgacagagtatgttgcataacttgatttgtttctgcattattcctgttcctgc |
282 |
Q |
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| T |
14985106 |
agggaaacaacctacgtcaaccgacagagtatgttgcataacttgatttgtttccgcattattcctgttcctgc |
14985033 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 5618978 - 5618905
Alignment:
| Q |
22 |
acaacactgttcttgttgacacagttgactactcccagtgcatcactaattacttccacactttggataccttg |
95 |
Q |
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|||||| ||||||||||||||||||| |||||| |||| |||||||| | |||| |||||||||||| ||||| |
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| T |
5618978 |
acaacagtgttcttgttgacacagttaactactgccagcgcatcactgaccactttcacactttggattccttg |
5618905 |
T |
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