View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14601_high_2 (Length: 452)
Name: NF14601_high_2
Description: NF14601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14601_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 43726011 - 43725597
Alignment:
| Q |
16 |
catagtttaatagagtgatatgtactagatatatagataaacggatagatagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43726011 |
catagtttaatagagtgatatgtactagatatatagataaacggatagatagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtc |
43725912 |
T |
|
| Q |
116 |
tttgaggttgttgagagatgtgttgttgagaaaccatttcatcatcatcaacagaacaaagttgaagttccttgtccatgtttttt-attgtaatgtcac |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43725911 |
tttgaggttgttgaga---------------aaccatttcatcatcgtcaacagaacaaagttgaagttccttgtccatgtttttttattgtaatgtcac |
43725827 |
T |
|
| Q |
215 |
taccaaaccaagatattccttcctatcgtatatatgtaaaaggaagatggaaagacaagaagagtgaagtgtttatataaagtagcaatgtccatgcaaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43725826 |
taccaaaccaagatattccttcctatcgtatatatgtaaaaggaagatggaaagacaagaagagtgaagtgtttatttaaagtagcaatgtccatgcaaa |
43725727 |
T |
|
| Q |
315 |
taattggattttgtttgattgaagtttggtgtgaaaagatgtcgatgcttgcgaattgcaaacgtttttgcgtgttcat---gtgtgaatgcatttgcta |
411 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43725726 |
taattggat----tttgattgaagtttggtgtgaaaagatgtcgatgcttgcgaattgcaaacgtttttgcgtgttcatgtggtgtgaatgcatttgcta |
43725631 |
T |
|
| Q |
412 |
aaaatgcatatctgtaatgcactgtccctctgtg |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
43725630 |
aaaatgcatatctgtaatgcactgtccctctgtg |
43725597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 43697576 - 43697509
Alignment:
| Q |
64 |
atagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtctttgaggttgttgaga |
131 |
Q |
| |
|
|||||||| | |||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43697576 |
atagataagataccaattataaaaggcatggtgataagaccacccttgcgtctttgtggttgttgaga |
43697509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 43684929 - 43684885
Alignment:
| Q |
161 |
catcaacagaacaaagttgaagttccttgtccatgttttttattg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43684929 |
catcaacagaacaaagttgaagttccttgtccattttttttattg |
43684885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 43712385 - 43712341
Alignment:
| Q |
161 |
catcaacagaacaaagttgaagttccttgtccatgttttttattg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43712385 |
catcaacagaacaaagttgaagttccttgtccattttttttattg |
43712341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 43712478 - 43712419
Alignment:
| Q |
65 |
tagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtctttgaggtt |
124 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
43712478 |
tagataagataccaatgataaaaggcatggtgacaagaccacccttgcttctttgtggtt |
43712419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 43685022 - 43684969
Alignment:
| Q |
65 |
tagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtcttt |
118 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
43685022 |
tagataagataccaatgataaaaggcatggtgacaagaccacccttgcttcttt |
43684969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 43697485 - 43697447
Alignment:
| Q |
161 |
catcaacagaacaaagttgaagttccttgtccatgtttt |
199 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
43697485 |
catcaacagaacaaagctgaagttccttgtccatttttt |
43697447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 25270128 - 25270062
Alignment:
| Q |
59 |
gatagatagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtctttgaggttg |
125 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
25270128 |
gatagatagataacgtaccaatgatgaaaggcatagtgataagaccacccttgctcctttgtggttg |
25270062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University