View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14601_high_4 (Length: 305)
Name: NF14601_high_4
Description: NF14601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14601_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 110 - 284
Target Start/End: Original strand, 1369283 - 1369452
Alignment:
| Q |
110 |
cgtgtacccatcacctatgcacctcatattttggcaaataatattttgcttctgccaaagaacccgagcgttatgaatgtcacctcaccaaaccagagtt |
209 |
Q |
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| T |
1369283 |
cgtgtacccatcacctatgcacctgatattttggaaaataatattttgcttctgccaaagaatctgagcgttatgaatgtcac-----caaaccagagtt |
1369377 |
T |
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| Q |
210 |
caccaaggatcaaaatgtagatcctaatcaaagcacaaaactcgaatgggatgagaaatggaaatagttttgatg |
284 |
Q |
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| T |
1369378 |
caccaaagatcaaaatgtatatcctaatcaaagcacaaaactctaatgggatgagaaatggaaatagttttgatg |
1369452 |
T |
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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 1369146 - 1369232
Alignment:
| Q |
24 |
agtgccataatggttattcgtgaaacagatgatggtcaatatttgatgcttcggagcatgttacctctgatgtgattcaaacaccac |
110 |
Q |
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| T |
1369146 |
agtgccataatggttattcgtgaaatagatgatggtcaatatttgatgcttcggaatatgttacctctgatgtgattcaaacaccac |
1369232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 45525538 - 45525443
Alignment:
| Q |
16 |
aatatagtagtgccataatggttattcgtgaaacagatgatggtca-atatttgatgcttcggagcatgttacctctgatgtgattcaaacaccac |
110 |
Q |
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| T |
45525538 |
aatatagcagtgccataatggttattcatgaaacagatgatggtcatatatttgatgcttgggagcatgttacctctgatttgattcaaacaccac |
45525443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 53096373 - 53096251
Alignment:
| Q |
162 |
tgccaaagaacccgagcgttatgaatgtcacctcaccaaaccagagttcaccaaggatcaaaatgtaga-tcctaatcaaagcacaaaactcgaatggga |
260 |
Q |
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| T |
53096373 |
tgccaaagaacccgagcgttatgaatgtcacc-----aacccagagtacaccaaggatcaaagtgtggagttctaatcaaagcacaaaactcaaatggga |
53096279 |
T |
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| Q |
261 |
tgagaaatggaaatagttttgatgttgg |
288 |
Q |
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| T |
53096278 |
cgagaaatggaaatagttttgatgttgg |
53096251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 38076957 - 38077042
Alignment:
| Q |
26 |
tgccataatggttattcgtgaaacagatgatggtca-atatttgatgcttcggagcatgttacctctgatgtgattcaaacaccac |
110 |
Q |
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| T |
38076957 |
tgccataatggttattcatgaaacagacgatgggcagatatatgatgcttgggagcaagtaacctctgatgtaattcaaaccccac |
38077042 |
T |
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