View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14601_low_5 (Length: 239)
Name: NF14601_low_5
Description: NF14601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14601_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 52464576 - 52464709
Alignment:
| Q |
102 |
cattgaacactctttctcgctcgctgatttcttcatcatcggtttgctattctcctcatcatgagaatcacaatcgtggatcggatccgacttgaccagt |
201 |
Q |
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| T |
52464576 |
cattgaacactctttctcgctcgctgatttcttcatcatcggtttgctattctcctcatcatcagaatcacaatcgtggatcggatccgacttgaccagt |
52464675 |
T |
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| Q |
202 |
tctataggtggggttttgggttctgtctgtgctg |
235 |
Q |
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| T |
52464676 |
tctataggtggggttttgggttctgtttgtgctg |
52464709 |
T |
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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 52464526 - 52464580
Alignment:
| Q |
1 |
gcatcatccgcttcatcttcttctttactcgtcgctgattcactcctcgccattg |
55 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
52464526 |
gcatcatccgcttcatcttcttctttactcgtcgttgattcacttctcgccattg |
52464580 |
T |
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