View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14602_high_6 (Length: 275)

Name: NF14602_high_6
Description: NF14602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14602_high_6
NF14602_high_6
[»] chr8 (2 HSPs)
chr8 (24-258)||(29150964-29151198)
chr8 (178-243)||(26387133-26387198)
[»] chr2 (4 HSPs)
chr2 (121-258)||(2580375-2580512)
chr2 (109-258)||(2595112-2595261)
chr2 (122-258)||(2575995-2576130)
chr2 (167-258)||(2585807-2585898)
[»] chr6 (1 HSPs)
chr6 (111-258)||(30398208-30398351)
[»] chr3 (2 HSPs)
chr3 (111-201)||(21621218-21621308)
chr3 (111-201)||(21642888-21642978)
[»] chr7 (4 HSPs)
chr7 (167-257)||(36259410-36259500)
chr7 (167-258)||(46768559-46768649)
chr7 (167-245)||(36254531-36254609)
chr7 (167-219)||(36262222-36262274)
[»] chr4 (6 HSPs)
chr4 (167-230)||(19353603-19353666)
chr4 (167-236)||(19355222-19355291)
chr4 (167-258)||(35766191-35766282)
chr4 (167-245)||(19358295-19358373)
chr4 (178-258)||(19360627-19360707)
chr4 (167-230)||(19356700-19356763)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 24 - 258
Target Start/End: Original strand, 29150964 - 29151198
Alignment:
Q  24 gcattgcatccccgccgctgccgccactgctgctttcattcacaagcatcggttcgcatctccgttgagtatgagtgatcctccggttcaacccaatgca 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  29150964 gcattgcatccccgccgctgccgccactgctgctttcattcacaagcatcggttcgcatctccgttgagtatgagtgatcctccagctcaacccaatgca 29151063  T
Q  124 gagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttgga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29151064 gagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttgga 29151163  T
Q  224 gatctatcatttctgatcctaaattcgtcaaactt 258  Q
    |||||||||||||||||||||||||||||||||||    
T  29151164 gatctatcatttctgatcctaaattcgtcaaactt 29151198  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 26387133 - 26387198
Alignment:
Q  178 gatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcct 243  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||| |||||||||||||||||||    
T  26387133 gatgtgaaatctcttatgcaaatgaggttcgtatgcaagtcttggaaatctatcatttctgatcct 26387198  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 121 - 258
Target Start/End: Original strand, 2580375 - 2580512
Alignment:
Q  121 gcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatctt 220  Q
    |||||||||||||||||||||||| |  ||||||| |  |||||| |||| |||||  |||||||||||||||||| |||||| || |||||||||||||    
T  2580375 gcagagtcaccggtaagcctctcttatgaccttatagtcgaaatcctttcattttctaatgtgaaatctcttatgcgaatgagatgcgtatgcaaatctt 2580474  T
Q  221 ggagatctatcatttctgatcctaaattcgtcaaactt 258  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  2580475 ggagatctatcatttctgatcctaaatttatcaaactt 2580512  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 258
Target Start/End: Original strand, 2595112 - 2595261
Alignment:
Q  109 gttcaacccaatgcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtg 208  Q
    ||||||||||| |||||||  ||||||||||||||| || | |||||||  |||||| |||||||||| ||||||||||| |||||||||||||| || |    
T  2595112 gttcaacccaacgcagagtttccggtaagcctctcttacgatcttatcgtcgaaatcctttccttttctgatgtgaaatcacttatgcaaatgagatgcg 2595211  T
Q  209 tatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaactt 258  Q
    ||||||||||||||| |||||| |||||||||| | ||||| ||||||||    
T  2595212 tatgcaaatcttggaaatctattatttctgatcatgaattcatcaaactt 2595261  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 258
Target Start/End: Original strand, 2575995 - 2576130
Alignment:
Q  122 cagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttg 221  Q
    ||||||| ||| ||||||||||| |  |||||||| | ||| || ||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||    
T  2575995 cagagtctccgataagcctctcttatgaccttatcaccgaagtc-tttcctttttcgatgtgaaaactcttatgcgaatgaggtgtgtatgcaaatcttg 2576093  T
Q  222 gagatctatcatttctgatcctaaattcgtcaaactt 258  Q
    || |||||| |||||||||||||||||| | ||||||    
T  2576094 gaaatctattatttctgatcctaaattcattaaactt 2576130  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 2585807 - 2585898
Alignment:
Q  167 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaactt 258  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| || |||| |||| || ||||| ||||||||    
T  2585807 tttccttttccgatgtgaaatctcttatgccaatgagatgtgtatgcaaatcttggaaatcaattatttttgattctgaattcatcaaactt 2585898  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 258
Target Start/End: Original strand, 30398208 - 30398351
Alignment:
Q  111 tcaacccaatgcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgta 210  Q
    ||||||||| |||||||  |||||||||||     || |||||||||| |||||| ||||||||||| |||||||||||||||||| |||| | || |||    
T  30398208 tcaacccaacgcagagtttccggtaagcctt----acgaccttatcgccgaaatcctttccttttccaatgtgaaatctcttatgctaatgcgatgagta 30398303  T
Q  211 tgcaaatcttggagatctatcatttctgatcctaaattcgtcaaactt 258  Q
    ||| ||||||||| |||||| |||||||| ||| ||||||||||||||    
T  30398304 tgccaatcttggaaatctattatttctgaacctgaattcgtcaaactt 30398351  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 21621308 - 21621218
Alignment:
Q  111 tcaacccaatgcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatg 201  Q
    ||||||||| |||||||  ||||||||||||||| || |||||||||| |||||| ||||||||||| |||||||||||||||||| ||||    
T  21621308 tcaacccaacgcagagtttccggtaagcctctcttacgaccttatcgccgaaatcctttccttttccaatgtgaaatctcttatgcgaatg 21621218  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 21642978 - 21642888
Alignment:
Q  111 tcaacccaatgcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatg 201  Q
    ||||||||| |||||||  ||||||||||||||| || |||||||||| |||||| ||||||||||| |||||||||||||||||| ||||    
T  21642978 tcaacccaacgcagagtttccggtaagcctctcttacgaccttatcgccgaaatcctttccttttccaatgtgaaatctcttatgcgaatg 21642888  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 36259410 - 36259500
Alignment:
Q  167 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaact 257  Q
    |||| |||||||||||||| |  |||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||||| || |||||    
T  36259410 tttcattttccgatgtgaagttccttatgcaaatgagatgtgtatgcaagtcttggaaatctataatttctgatcctaaatttgtgaaact 36259500  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 46768559 - 46768649
Alignment:
Q  167 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaactt 258  Q
    ||||||| |||||||||||||||||||||| |||||| ||||| ||||||||||||| |||||| ||||| ||||||| |||  ||||||||    
T  46768559 tttccttctccgatgtgaaatctcttatgcgaatgagatgtgt-tgcaaatcttggaaatctattatttccgatcctatatttatcaaactt 46768649  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 36254531 - 36254609
Alignment:
Q  167 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaa 245  Q
    |||| ||||||||||||||||  |||||||||||||||||  | ||||| ||||||| |||| | ||||| ||||||||    
T  36254531 tttcattttccgatgtgaaattccttatgcaaatgaggtgcctttgcaagtcttggaaatctctaatttccgatcctaa 36254609  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 36262222 - 36262274
Alignment:
Q  167 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatct 219  Q
    |||| ||||| ||||| ||||  ||||||||||||||||||||||||||||||    
T  36262222 tttcattttctgatgttaaattccttatgcaaatgaggtgtgtatgcaaatct 36262274  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 19353603 - 19353666
Alignment:
Q  167 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctat 230  Q
    |||| ||||||||||| ||||  |||||||||||||||||||||||||| ||||||| ||||||    
T  19353603 tttcattttccgatgttaaattccttatgcaaatgaggtgtgtatgcaagtcttggaaatctat 19353666  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 19355222 - 19355291
Alignment:
Q  167 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttc 236  Q
    |||| |||| |||||| ||||  |||||||||||||||||||||||||| ||||||| |||||| |||||    
T  19355222 tttcatttttcgatgttaaattccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatttc 19355291  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 35766191 - 35766282
Alignment:
Q  167 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaactt 258  Q
    |||||||||||||||||||||||||||| |||||||  ||  | ||||| |||||||  ||||| || || ||||||||||| | |||||||    
T  35766191 tttccttttccgatgtgaaatctcttatccaaatgaaatgcctttgcaagtcttggaattctataatctccgatcctaaatttgccaaactt 35766282  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 19358295 - 19358373
Alignment:
Q  167 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaa 245  Q
    |||| ||||||||||| ||||  ||||||||||||||||||||||| |  ||||||| |||||| |||||  |||||||    
T  19358295 tttcgttttccgatgttaaattccttatgcaaatgaggtgtgtatggatctcttggaaatctataatttccaatcctaa 19358373  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 19360627 - 19360707
Alignment:
Q  178 gatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaactt 258  Q
    ||||||||||  || ||| ||||||||||| ||| ||| ||||||| |||| | ||||||||||||||||| || ||||||    
T  19360627 gatgtgaaattcctcatgtaaatgaggtgtttatccaagtcttggaaatctctaatttctgatcctaaatttgtgaaactt 19360707  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 19356700 - 19356763
Alignment:
Q  167 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctat 230  Q
    |||| ||||||| ||| ||||  |||||||||||||||||||||||||| ||||| | ||||||    
T  19356700 tttcattttccggtgttaaattccttatgcaaatgaggtgtgtatgcaattcttgaaaatctat 19356763  T

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