View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14602_low_1 (Length: 683)

Name: NF14602_low_1
Description: NF14602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14602_low_1
NF14602_low_1
[»] chr8 (19 HSPs)
chr8 (13-380)||(6875099-6875468)
chr8 (381-666)||(6875498-6875763)
chr8 (13-164)||(6864302-6864456)
chr8 (385-447)||(10383913-10383975)
chr8 (401-450)||(20672775-20672824)
chr8 (381-450)||(42215282-42215351)
chr8 (200-302)||(6864478-6864590)
chr8 (381-453)||(7918422-7918494)
chr8 (394-450)||(11183570-11183626)
chr8 (393-453)||(21653103-21653163)
chr8 (381-439)||(32840961-32841020)
chr8 (395-445)||(43704366-43704416)
chr8 (390-455)||(30918133-30918197)
chr8 (381-445)||(926505-926569)
chr8 (384-436)||(3254264-3254316)
chr8 (390-450)||(11569442-11569502)
chr8 (119-187)||(30389163-30389231)
chr8 (200-244)||(42215101-42215145)
chr8 (200-244)||(42215325-42215369)
[»] chr1 (22 HSPs)
chr1 (381-453)||(31517716-31517788)
chr1 (381-453)||(19389923-19389996)
chr1 (394-451)||(6292517-6292574)
chr1 (383-439)||(4481966-4482022)
chr1 (391-447)||(37593670-37593726)
chr1 (390-449)||(4699600-4699659)
chr1 (390-448)||(11639401-11639459)
chr1 (396-453)||(4622115-4622172)
chr1 (200-249)||(32548650-32548699)
chr1 (397-453)||(46252674-46252730)
chr1 (381-436)||(6262777-6262832)
chr1 (381-448)||(10199384-10199451)
chr1 (382-452)||(2777915-2777985)
chr1 (396-450)||(35080060-35080114)
chr1 (390-451)||(6262044-6262105)
chr1 (390-439)||(7119922-7119971)
chr1 (401-450)||(15361065-15361114)
chr1 (385-450)||(35925715-35925780)
chr1 (381-453)||(37473425-37473498)
chr1 (381-450)||(44422724-44422793)
chr1 (390-453)||(15942732-15942796)
chr1 (92-124)||(17420329-17420361)
[»] chr6 (18 HSPs)
chr6 (200-249)||(2455812-2455861)
chr6 (381-455)||(20368156-20368230)
chr6 (110-178)||(31461745-31461813)
chr6 (384-439)||(1575931-1575986)
chr6 (395-453)||(4420665-4420723)
chr6 (384-426)||(26559218-26559260)
chr6 (390-447)||(28641734-28641791)
chr6 (384-453)||(31624112-31624181)
chr6 (383-439)||(33832251-33832307)
chr6 (200-246)||(4420648-4420694)
chr6 (382-451)||(9912167-9912237)
chr6 (201-242)||(2205610-2205651)
chr6 (381-450)||(7945860-7945929)
chr6 (391-436)||(22743520-22743565)
chr6 (91-136)||(30641860-30641905)
chr6 (390-434)||(696483-696527)
chr6 (385-425)||(769188-769228)
chr6 (381-425)||(10616689-10616733)
[»] chr5 (24 HSPs)
chr5 (390-453)||(8089958-8090021)
chr5 (381-447)||(17258859-17258925)
chr5 (381-453)||(12459977-12460049)
chr5 (383-450)||(10125696-10125763)
chr5 (390-453)||(37611200-37611263)
chr5 (390-453)||(37787930-37787993)
chr5 (383-453)||(17368698-17368768)
chr5 (390-436)||(37794683-37794729)
chr5 (394-450)||(6587096-6587152)
chr5 (390-451)||(11615639-11615697)
chr5 (401-447)||(12521556-12521602)
chr5 (200-242)||(33533558-33533600)
chr5 (384-453)||(7674670-7674739)
chr5 (396-445)||(12467163-12467212)
chr5 (390-447)||(32897485-32897542)
chr5 (381-453)||(39105486-39105559)
chr5 (390-450)||(5531060-5531119)
chr5 (200-244)||(11684421-11684465)
chr5 (390-450)||(14295531-14295591)
chr5 (394-450)||(14331392-14331448)
chr5 (385-425)||(37489062-37489102)
chr5 (390-450)||(37526184-37526244)
chr5 (390-450)||(37588345-37588405)
chr5 (390-450)||(37690621-37690681)
[»] chr3 (24 HSPs)
chr3 (383-453)||(50952355-50952425)
chr3 (381-450)||(21574515-21574584)
chr3 (382-450)||(1816608-1816676)
chr3 (395-450)||(3044249-3044304)
chr3 (383-453)||(30573892-30573962)
chr3 (381-453)||(21367689-21367762)
chr3 (382-453)||(24085314-24085386)
chr3 (399-455)||(25925762-25925818)
chr3 (393-453)||(36139900-36139960)
chr3 (393-447)||(36101596-36101650)
chr3 (200-242)||(37273143-37273185)
chr3 (379-453)||(47513675-47513749)
chr3 (381-453)||(402517-402590)
chr3 (390-439)||(5391915-5391964)
chr3 (404-453)||(40665451-40665500)
chr3 (98-147)||(44237521-44237570)
chr3 (384-425)||(45541621-45541662)
chr3 (384-453)||(47249465-47249534)
chr3 (206-246)||(2825152-2825192)
chr3 (206-242)||(22667413-22667449)
chr3 (206-242)||(22724052-22724088)
chr3 (390-450)||(24281072-24281132)
chr3 (390-434)||(39723385-39723429)
chr3 (111-163)||(49605781-49605833)
[»] chr7 (13 HSPs)
chr7 (382-439)||(30535599-30535656)
chr7 (384-439)||(15740390-15740445)
chr7 (390-453)||(25670571-25670634)
chr7 (390-453)||(21247947-21248011)
chr7 (390-450)||(46082061-46082121)
chr7 (384-435)||(11048067-11048118)
chr7 (383-434)||(19719047-19719098)
chr7 (200-242)||(25596042-25596084)
chr7 (390-451)||(36598341-36598402)
chr7 (395-451)||(7244704-7244760)
chr7 (394-434)||(11047908-11047948)
chr7 (383-439)||(36537944-36538000)
chr7 (390-434)||(43219789-43219833)
[»] chr2 (21 HSPs)
chr2 (381-450)||(15120208-15120277)
chr2 (200-242)||(34652055-34652097)
chr2 (381-453)||(16451140-16451213)
chr2 (384-448)||(1647263-1647327)
chr2 (381-453)||(8017456-8017528)
chr2 (383-423)||(16398449-16398489)
chr2 (390-453)||(35379001-35379064)
chr2 (200-242)||(16867748-16867790)
chr2 (381-451)||(28677635-28677705)
chr2 (395-453)||(34652026-34652084)
chr2 (381-453)||(4606947-4607020)
chr2 (383-436)||(13220472-13220525)
chr2 (392-453)||(14451037-14451098)
chr2 (390-442)||(1494431-1494483)
chr2 (381-421)||(1801722-1801762)
chr2 (385-437)||(2091014-2091066)
chr2 (381-453)||(12313149-12313221)
chr2 (388-416)||(15870283-15870311)
chr2 (383-451)||(24347746-24347814)
chr2 (390-453)||(36043926-36043990)
chr2 (311-347)||(43808473-43808509)
[»] scaffold0608 (1 HSPs)
scaffold0608 (383-439)||(9615-9671)
[»] chr4 (14 HSPs)
chr4 (390-450)||(20936214-20936274)
chr4 (381-436)||(22662223-22662278)
chr4 (394-444)||(30631987-30632037)
chr4 (390-447)||(679746-679803)
chr4 (384-453)||(30066745-30066814)
chr4 (382-453)||(17822841-17822913)
chr4 (381-421)||(22666702-22666742)
chr4 (390-425)||(1965991-1966026)
chr4 (390-453)||(2996595-2996658)
chr4 (382-437)||(25571298-25571353)
chr4 (228-271)||(54462156-54462199)
chr4 (382-448)||(1137739-1137805)
chr4 (200-244)||(28300318-28300362)
chr4 (395-447)||(29263398-29263450)


Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-169; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 13 - 380
Target Start/End: Original strand, 6875099 - 6875468
Alignment:
Q  13 aaaatcactattacgcaaaacacagacaacaaggtattagatacccatataaacagcatatatggatcactgagtcatttaaggtcctgtttcaattggt 112  Q
    ||||||||| | || ||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6875099 aaaatcactttcactcaaaacacagacaactagatagtagatacccatataaacagcatatatggatcactgagtcatttaaggtcctgtttcaattggt 6875198  T
Q  113 ttatttgagtttatctatttgcataagtacttgtggaagtgtttgaaagagcataggaaaatagctaatggcatgcccatnnnnnnntttcaacttattt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  6875199 ttatttgagtttatctatttgcataagtacttgtggaagtgtttgaaagagcataggaaaatagctaatggcatgcccataaatttttttcaacttattt 6875298  T
Q  213 ccttaagctctccaagatagcatatgaaaataac--atatgaaaatagtttgtctttattttgtcttttatgttacagaaacagcttaggcataactgcg 310  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||    
T  6875299 ccttaagctctccaagatagcatatgaaaataacttatatgaaaatagtttgactttattttgtcttttatgttatagaaacagcttaggcataactacg 6875398  T
Q  311 tatatgatacgcgcttatgatataagcacttaattaagggactgtttgaattggtttatttaagcttatc 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6875399 tatatgatacgcgcttatgatataagcacttaattaagggactgtttgaattggtttatttaagcttatc 6875468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 381 - 666
Target Start/End: Original strand, 6875498 - 6875763
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaagaaatttgannnnnnnnaaatctttctct 480  Q
    |||||||||||||||||||  ||||||||||||||||||||          |||||||||||||||||||||||||||||        ||||||||||||    
T  6875498 gggagaacatatgaaaacagattatgatatgttcataagct----------tattttcaaaagctctccaagaaatttgatttttt--aaatctttctct 6875585  T
Q  481 atagaaatagctcataggcatacataaacacttatataataagtgtttaagctaagacctgctaagtgcttaattaagtggtttatccaaacatggtctc 580  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  6875586 atagaaatagctcataggcatacataaacacttatataatgagtgtttaagcta--------taagtgcttaattaagtggtttatccaaacatggtctc 6875677  T
Q  581 ttaatttacctggaaaatcatcatcgccatcatttgctgtggaagtaccttctttttcaagaagatcaggtgcaccataccatttc 666  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6875678 ttaatttacctggaaaatcatcatcaccatcatttgctgtggaagtaccttctttttcaagaagatcaggtgcaccataccatttc 6875763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 6864302 - 6864456
Alignment:
Q  13 aaaatcactattacgcaaaacacagacaacaaggtattagatacccatataaacagca-tatatggatcac--tgagtcatttaaggtcctgtttcaatt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||  |||||||||| |||| |||||||||||    
T  6864302 aaaatcactattacgcaaaacacagacaacaaggtattagatacccatataaacagcattttttggatcactgtgagtcattttaggttctgtttcaatt 6864401  T
Q  110 ggtttatttgagtttatctatttgcataagtacttgtggaagtgtttgaaagagc 164  Q
    ||||||||||||| |||||||||||||||| ||||  | ||||||||| ||||||    
T  6864402 ggtttatttgagtctatctatttgcataagcacttaagaaagtgtttggaagagc 6864456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 447
Target Start/End: Complemental strand, 10383975 - 10383913
Alignment:
Q  385 gaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctct 447  Q
    |||| |||||||||| ||||||| || ||||||||||||||| ||||||||| || |||||||    
T  10383975 gaacttatgaaaacagcttatgacattttcataagctgtttacagcttatttccataagctct 10383913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 20672824 - 20672775
Alignment:
Q  401 cttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    ||||||| |||||||||||||||||  |||||||||||| ||||||||||    
T  20672824 cttatgacatgttcataagctgttttcagcttattttcataagctctcca 20672775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 42215282 - 42215351
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    ||||||||  ||||||||| |||||||  ||||||||||||||||  ||||||||| || ||||||||||    
T  42215282 gggagaactaatgaaaacagcttatgacttgttcataagctgttttcagcttatttacataagctctcca 42215351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 200 - 302
Target Start/End: Original strand, 6864478 - 6864590
Alignment:
Q  200 tttcaacttatttccttaagctctccaagatagcatatgaaaataacatat---------gaaaatagtttgtctttattttgt-cttttatgttacaga 289  Q
    ||||| |||||||||| ||||||||||| ||||| |||||||| ||| |||         |||||||||||| ||||||||| | ||||||||||| |||    
T  6864478 tttcagcttatttcctcaagctctccaaaatagcttatgaaaacaacttataacttacatgaaaatagtttgactttattttatccttttatgttataga 6864577  T
Q  290 aacagcttaggca 302  Q
    || ||||||||||    
T  6864578 aatagcttaggca 6864590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 7918422 - 7918494
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||| | ||||||||||||||| || |||||||||||||||||  | |||||||  | |||||||||||||    
T  7918422 gggagagcttatgaaaacaacttaagacatgttcataagctgtttccaacttatttcaataagctctccaaga 7918494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 11183626 - 11183570
Alignment:
Q  394 aaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||||||||||||||||||  |||||||||||  ||||||||| || ||||||||||    
T  11183626 aaaacaacttatgatatgtctataagctgttttcagcttatttccataagctctcca 11183570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 21653163 - 21653103
Alignment:
Q  393 gaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||| |||||||||| | ||||||||||| |||  |||||||||||| |||||||||||||    
T  21653163 gaaatcaacttatgacacgttcataagctattttcagcttattttcataagctctccaaga 21653103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 439
Target Start/End: Original strand, 32840961 - 32841020
Alignment:
Q  381 gggagaacatatgaaaacaacttatgata-tgttcataagctgtttaaagcttattttca 439  Q
    |||||||| |||||||||||||||||| | |||||||||| |||||  ||||||||||||    
T  32840961 gggagaacttatgaaaacaacttatgacattgttcataagttgttttcagcttattttca 32841020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 445
Target Start/End: Original strand, 43704366 - 43704416
Alignment:
Q  395 aaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagct 445  Q
    ||||||||||||| |||||||||| |||||| |||||||||| || |||||    
T  43704366 aaacaacttatgacatgttcataaactgttttaagcttatttccataagct 43704416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 455
Target Start/End: Complemental strand, 30918197 - 30918133
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaagaaa 455  Q
    |||||||||||||| ||| || |||||||| |||||  ||||||||| || |||||||||||||||    
T  30918197 tatgaaaacaacttgtgacat-ttcataagttgttttcagcttatttccataagctctccaagaaa 30918133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 381 - 445
Target Start/End: Complemental strand, 926569 - 926505
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagct 445  Q
    |||||||  ||| |||||||||||||| |||||||||||| ||||  ||||||||| || |||||    
T  926569 gggagaatttatcaaaacaacttatgacatgttcataagccgttttcagcttatttccacaagct 926505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 384 - 436
Target Start/End: Complemental strand, 3254316 - 3254264
Alignment:
Q  384 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattt 436  Q
    ||||| || ||||||| ||||||| |||||||||||||||||  |||||||||    
T  3254316 agaacttaagaaaacagcttatgacatgttcataagctgttttcagcttattt 3254264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 11569442 - 11569502
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||| ||||| ||||||| |||| |||||| |||||  ||||||||||||||| |||||||    
T  11569442 tatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctcca 11569502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 30389231 - 30389163
Alignment:
Q  119 gagtttatctatttgcataagtacttgtggaagtgtttgaaagagcataggaaaatagctaatggcatg 187  Q
    ||||||| ||| | ||||||||||| |||  | ||||||| |||||||| |||||||||||||| ||||    
T  30389231 gagtttaactactggcataagtactcgtgacactgtttgagagagcatatgaaaatagctaatgacatg 30389163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 42215101 - 42215145
Alignment:
Q  200 tttcaacttatttccttaagctctccaagatagcatatgaaaata 244  Q
    ||||| ||||||| | |||||||||||||||||| ||||||||||    
T  42215101 tttcagcttatttacataagctctccaagatagcttatgaaaata 42215145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 42215325 - 42215369
Alignment:
Q  200 tttcaacttatttccttaagctctccaagatagcatatgaaaata 244  Q
    ||||| ||||||| | ||||||||||| |||||||||||||||||    
T  42215325 tttcagcttatttacataagctctccaggatagcatatgaaaata 42215369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 31517716 - 31517788
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||| ||| ||||||||| |||| |||||||||||||||||  |||||||||||| |||||||||||||    
T  31517716 gggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttattttcataagctctccaaga 31517788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 19389996 - 19389923
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctg-tttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||| |||||||| ||||||||||||||||||||| || |||  |||||||||||| |||||||||||||    
T  19389996 gggagaacgtatgaaaaaaacttatgatatgttcataagttgttttttagcttattttcacaagctctccaaga 19389923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 6292574 - 6292517
Alignment:
Q  394 aaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaa 451  Q
    |||||| ||||||| |||||||||||||||||  |||||||||||| |||||||||||    
T  6292574 aaaacagcttatgacatgttcataagctgttttcagcttattttcataagctctccaa 6292517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 383 - 439
Target Start/End: Complemental strand, 4482022 - 4481966
Alignment:
Q  383 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 439  Q
    |||||| |||||||||||||||| | |||||||||||||||||  ||||||||||||    
T  4482022 gagaacttatgaaaacaacttattacatgttcataagctgtttttagcttattttca 4481966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 37593670 - 37593726
Alignment:
Q  391 atgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctct 447  Q
    ||||| ||||||||||| |||||||||||||||||  |||||||||||| |||||||    
T  37593670 atgaacacaacttatgacatgttcataagctgttttcagcttattttcataagctct 37593726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 390 - 449
Target Start/End: Original strand, 4699600 - 4699659
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcc 449  Q
    |||||||||||||||||| |||||||||||||||||  |||||||||  | |||||||||    
T  4699600 tatgaaaacaacttatgacatgttcataagctgtttttagcttatttctataagctctcc 4699659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 11639401 - 11639459
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctc 448  Q
    |||||||||| ||||||| |||| ||||||||||||  |||||||||||| ||||||||    
T  11639401 tatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagctctc 11639459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 396 - 453
Target Start/End: Complemental strand, 4622172 - 4622115
Alignment:
Q  396 aacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||| ||||||| |||| ||||||||||||  |||||||||||| |||||||||||||    
T  4622172 aacatcttatgacatgtccataagctgtttttagcttattttcacaagctctccaaga 4622115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 32548650 - 32548699
Alignment:
Q  200 tttcaacttatttccttaagctctccaagatagcatatgaaaataacata 249  Q
    ||||||||||||||| ||||||| |||||||||| |||||||| ||||||    
T  32548650 tttcaacttatttccataagctccccaagatagcttatgaaaacaacata 32548699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 397 - 453
Target Start/End: Original strand, 46252674 - 46252730
Alignment:
Q  397 acaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    ||||||||||| ||||||||||| |||||  || ||||||||| |||||||||||||    
T  46252674 acaacttatgacatgttcataagttgttttcaggttattttcataagctctccaaga 46252730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 6262832 - 6262777
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattt 436  Q
    |||||| | |||||||| |||||||||||||| |||||| ||||| ||||||||||    
T  6262832 gggagagcttatgaaaataacttatgatatgtccataagttgttttaagcttattt 6262777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 448
Target Start/End: Original strand, 10199384 - 10199451
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctc 448  Q
    ||||||||  ||||||| | ||||||| ||||||||||| |||||  |||||||||||| ||||||||    
T  10199384 gggagaactcatgaaaatagcttatgacatgttcataagttgttttcagcttattttcataagctctc 10199451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 452
Target Start/End: Complemental strand, 2777985 - 2777915
Alignment:
Q  382 ggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaag 452  Q
    ||||||| ||||||| ||||||||||  | ||||||||| ||||  |||||||||||| ||| ||||||||    
T  2777985 ggagaacttatgaaaccaacttatgacgtattcataagccgttttcagcttattttcataagttctccaag 2777915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 450
Target Start/End: Original strand, 35080060 - 35080114
Alignment:
Q  396 aacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||||||||||| |||||||||||||||||  |||||||||  | ||||||||||    
T  35080060 aacaacttatgacatgttcataagctgttttgagcttatttcgacaagctctcca 35080114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 451
Target Start/End: Complemental strand, 6262105 - 6262044
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaa 451  Q
    ||||| |||||||||||| ||||||||||||| |||  | ||||||| || |||||||||||    
T  6262105 tatgagaacaacttatgacatgttcataagctattttcaacttatttccacaagctctccaa 6262044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 439
Target Start/End: Original strand, 7119922 - 7119971
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 439  Q
    ||||||||||||||||||||| ||||||||||| ||  ||||||| ||||    
T  7119922 tatgaaaacaacttatgatatcttcataagctgctttcagcttatattca 7119971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 15361114 - 15361065
Alignment:
Q  401 cttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||||| |||||||||||| |||||  |||||||||||| ||||||||||    
T  15361114 cttatgctatgttcataagttgttttcagcttattttcataagctctcca 15361065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 450
Target Start/End: Complemental strand, 35925780 - 35925715
Alignment:
Q  385 gaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||| |||||||||| ||||||| |||||||||||||||||  | ||||||| || || |||||||    
T  35925780 gaacttatgaaaacagcttatgacatgttcataagctgttttcaacttatttccataaactctcca 35925715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 37473498 - 37473425
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgtt-cataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||| | |||||||||||||||| || || |||||||| |||  |||||||||||| ||| |||||||||    
T  37473498 gggagaacttttgaaaacaacttatgacatttttcataagctttttccagcttattttcataagttctccaaga 37473425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 450
Target Start/End: Complemental strand, 44422793 - 44422724
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||||| | |||||||| | ||||||| |||| |||||||||  || |||||||||||| ||||||||||    
T  44422793 gggagagcttatgaaaatagcttatgacatgtccataagctgactacagcttattttcataagctctcca 44422724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 15942732 - 15942796
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagc-tgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||||||||||||| |||||||||||| |||||  |||||||||  | ||| |||||||||    
T  15942732 tatgaaaacaacttatgacatgttcataagcatgttttcagcttatttcaataagttctccaaga 15942796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 17420361 - 17420329
Alignment:
Q  92 taaggtcctgtttcaattggtttatttgagttt 124  Q
    ||||| |||||||||||||||||||||||||||    
T  17420361 taagggcctgtttcaattggtttatttgagttt 17420329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 2455861 - 2455812
Alignment:
Q  200 tttcaacttatttccttaagctctccaagatagcatatgaaaataacata 249  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  2455861 tttcaacttatttccataagctctccaagatagcttatgaaaataacata 2455812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 381 - 455
Target Start/End: Original strand, 20368156 - 20368230
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagct-gtttaaagcttattttcaaaagctctccaagaaa 455  Q
    |||||||| |||||||||||||||||| ||||||||||||| |||| || |||||||||| ||| |||||||||||    
T  20368156 gggagaacttatgaaaacaacttatgacatgttcataagctagtttcaa-cttattttcataagttctccaagaaa 20368230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 31461813 - 31461745
Alignment:
Q  110 ggtttatttgagtttatctatttgcataagtacttgtggaagtgtttgaaagagcataggaaaatagct 178  Q
    |||||||||||| |||||||||||||||||||||||||  | |||| | |||||| || ||||||||||    
T  31461813 ggtttatttgagcttatctatttgcataagtacttgtgagactgttcgcaagagcttacgaaaatagct 31461745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 384 - 439
Target Start/End: Complemental strand, 1575986 - 1575931
Alignment:
Q  384 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 439  Q
    ||||| |||||||||||||||||| |||||||||||||||||  | ||||||||||    
T  1575986 agaacttatgaaaacaacttatgacatgttcataagctgtttttaacttattttca 1575931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 453
Target Start/End: Complemental strand, 4420723 - 4420665
Alignment:
Q  395 aaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||| |||||| |||||||||||||||||  ||||||||| || |||||||||||||    
T  4420723 aaacaaattatgacatgttcataagctgttttcagcttatttccataagctctccaaga 4420665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 384 - 426
Target Start/End: Original strand, 26559218 - 26559260
Alignment:
Q  384 agaacatatgaaaacaacttatgatatgttcataagctgttta 426  Q
    ||||| |||||||||||||||||||||||||| ||||||||||    
T  26559218 agaacttatgaaaacaacttatgatatgttcacaagctgttta 26559260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 447
Target Start/End: Original strand, 28641734 - 28641791
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctct 447  Q
    |||||||||| ||||| | |||||||||||||||||  |||||||||||| |||||||    
T  28641734 tatgaaaacagcttataacatgttcataagctgtttttagcttattttcataagctct 28641791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 453
Target Start/End: Complemental strand, 31624181 - 31624112
Alignment:
Q  384 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    ||||| |||||||||| ||||||| |||||||||||||||||  | |||||||||| ||  |||||||||    
T  31624181 agaacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataatttctccaaga 31624112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 383 - 439
Target Start/End: Original strand, 33832251 - 33832307
Alignment:
Q  383 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 439  Q
    |||||| |||||||||||||||||| ||||| ||||| |||||  ||||||||||||    
T  33832251 gagaacttatgaaaacaacttatgacatgtttataagttgtttttagcttattttca 33832307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 4420694 - 4420648
Alignment:
Q  200 tttcaacttatttccttaagctctccaagatagcatatgaaaataac 246  Q
    ||||| ||||||||| |||||||||||||||||| || |||||||||    
T  4420694 tttcagcttatttccataagctctccaagatagcttaggaaaataac 4420648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 451
Target Start/End: Original strand, 9912167 - 9912237
Alignment:
Q  382 ggagaacatatgaaaacaacttatgatat-gttcataagctgtttaaagcttattttcaaaagctctccaa 451  Q
    ||||||| ||||||| || ||||||| || |||||||||||||||  |||||||||||| ||| |||||||    
T  9912167 ggagaacttatgaaaccagcttatgacattgttcataagctgttttgagcttattttcataagttctccaa 9912237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 2205610 - 2205651
Alignment:
Q  201 ttcaacttatttccttaagctctccaagatagcatatgaaaa 242  Q
    |||| ||||||||| |||||||||||||||||| ||||||||    
T  2205610 ttcagcttatttccataagctctccaagatagcttatgaaaa 2205651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 7945860 - 7945929
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||||||  |||||||||||||||||  ||||| || || ||||| |||||||||| || ||||||||||    
T  7945860 gggagaaattatgaaaacaacttatggcatgtttattagttgttttaagcttatttccataagctctcca 7945929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Complemental strand, 22743565 - 22743520
Alignment:
Q  391 atgaaaacaacttatgatatgttcataagctgtttaaagcttattt 436  Q
    ||||||||||||||| | |||||||||||||||||  |||||||||    
T  22743565 atgaaaacaacttattacatgttcataagctgttttcagcttattt 22743520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 30641905 - 30641860
Alignment:
Q  91 ttaaggtcctgtttcaattggtttatttgagtttatctatttgcat 136  Q
    |||||| ||||||| |||||| |||||||||||||||||| |||||    
T  30641905 ttaagggcctgtttgaattggcttatttgagtttatctatatgcat 30641860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 434
Target Start/End: Complemental strand, 696527 - 696483
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttat 434  Q
    |||||||||| ||||||| |||||||||||||||||  |||||||    
T  696527 tatgaaaacagcttatgacatgttcataagctgtttttagcttat 696483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 769228 - 769188
Alignment:
Q  385 gaacatatgaaaacaacttatgatatgttcataagctgttt 425  Q
    |||| |||||||||| ||||||| |||||||||||||||||    
T  769228 gaacttatgaaaacatcttatgacatgttcataagctgttt 769188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 10616689 - 10616733
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgttt 425  Q
    |||||||| ||| |||||| ||||||| |||||||||||||||||    
T  10616689 gggagaacttatcaaaacaccttatgacatgttcataagctgttt 10616733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 390 - 453
Target Start/End: Complemental strand, 8090021 - 8089958
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    ||||||||||||||||||||| ||| ||||||||||  |||||||||||| ||||||| |||||    
T  8090021 tatgaaaacaacttatgatatattcctaagctgttttcagcttattttcataagctcttcaaga 8089958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 381 - 447
Target Start/End: Original strand, 17258859 - 17258925
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctct 447  Q
    |||||||| |||||||| | ||||||| |||||||||||||||||  |||||||||||| |||||||    
T  17258859 gggagaacctatgaaaatagcttatgacatgttcataagctgttttcagcttattttcataagctct 17258925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 12459977 - 12460049
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||| |||||||||||||||||| ||||||||| | |||||   ||||||||||| ||||||| |||||    
T  12459977 gggagaacctatgaaaacaacttatgacatgttcatatgttgtttttggcttattttcataagctctgcaaga 12460049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 383 - 450
Target Start/End: Original strand, 10125696 - 10125763
Alignment:
Q  383 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||||| |||| ||||||||||||| ||||| ||||| |||||  |||||||||||| ||||||||||    
T  10125696 gagaacttatgtaaacaacttatgacatgttgataaggtgttttcagcttattttcataagctctcca 10125763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 37611200 - 37611263
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||||||||| ||| |||||||||||||||||  || |||||| || |||||||||||||    
T  37611200 tatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaaga 37611263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 37787930 - 37787993
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||||||||| ||| |||||||||||||||||  || |||||| || |||||||||||||    
T  37787930 tatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaaga 37787993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 383 - 453
Target Start/End: Complemental strand, 17368768 - 17368698
Alignment:
Q  383 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||| |||||||||||||||||| ||||||||| || ||||  ||||||||| || || ||||||||||    
T  17368768 gagaacttatgaaaacaacttatgacatgttcatatgcagttttcagcttatttccataacctctccaaga 17368698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 390 - 436
Target Start/End: Original strand, 37794683 - 37794729
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattt 436  Q
    |||||||||||||||||| |||||||||||||||||  |||||||||    
T  37794683 tatgaaaacaacttatgacatgttcataagctgttttgagcttattt 37794729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 450
Target Start/End: Original strand, 6587096 - 6587152
Alignment:
Q  394 aaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||||| ||||||| | |||||||||||||||| |||||||||||| ||| ||||||    
T  6587096 aaaacagcttatgacaggttcataagctgtttacagcttattttcacaagttctcca 6587152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 451
Target Start/End: Original strand, 11615639 - 11615697
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaa 451  Q
    |||||||||||||||||| | |||||| ||||||||   ||||||||||| |||||||||||    
T  11615639 tatgaaaacaacttatgacacgttcattagctgttt---gcttattttcataagctctccaa 11615697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 401 - 447
Target Start/End: Complemental strand, 12521602 - 12521556
Alignment:
Q  401 cttatgatatgttcataagctgtttaaagcttattttcaaaagctct 447  Q
    |||||||||||||||||||||||||  ||||||||| || |||||||    
T  12521602 cttatgatatgttcataagctgttttcagcttatttccataagctct 12521556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 33533558 - 33533600
Alignment:
Q  200 tttcaacttatttccttaagctctccaagatagcatatgaaaa 242  Q
    ||||||||||||||| |||||||||||||||||| | ||||||    
T  33533558 tttcaacttatttccataagctctccaagatagcttgtgaaaa 33533600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 453
Target Start/End: Complemental strand, 7674739 - 7674670
Alignment:
Q  384 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    ||||| |||| ||||||||||||| ||||| ||||| |||||  |||||||||||| ||  |||||||||    
T  7674739 agaacttatggaaacaacttatgacatgtttataaggtgttttcagcttattttcacaaattctccaaga 7674670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 445
Target Start/End: Complemental strand, 12467212 - 12467163
Alignment:
Q  396 aacaacttatgatatgttcataagctgtttaaagcttattttcaaaagct 445  Q
    |||||||||||| ||||| |||||||||||  |||||||||||| |||||    
T  12467212 aacaacttatgacatgtttataagctgttttcagcttattttcataagct 12467163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 447
Target Start/End: Complemental strand, 32897542 - 32897485
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctct 447  Q
    |||| |||||||||||||||| ||||||| ||||||   ||||||||||| |||||||    
T  32897542 tatggaaacaacttatgatattttcataacctgttttctgcttattttcataagctct 32897485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 39105559 - 39105486
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatat-gttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||  |||||||||| ||||||| || ||||||||||| |||  |||||||||||| ||| |||||||||    
T  39105559 gggagaatttatgaaaacagcttatgacattgttcataagctatttttagcttattttcataagttctccaaga 39105486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 450
Target Start/End: Complemental strand, 5531119 - 5531060
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    ||||||||||||||||||||||| |||||| |||||  | ||||||| || ||||||||||    
T  5531119 tatgaaaacaacttatgatatgtccataagttgttttta-cttatttccagaagctctcca 5531060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 11684465 - 11684421
Alignment:
Q  200 tttcaacttatttccttaagctctccaagatagcatatgaaaata 244  Q
    ||||||||||||||| |||||||||||  ||||| ||||||||||    
T  11684465 tttcaacttatttccgtaagctctccagcatagcttatgaaaata 11684421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 450
Target Start/End: Complemental strand, 14295591 - 14295531
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||||||||| ||||||||||||  |||||||||||  |||||| ||  ||||||||||||    
T  14295591 tatgaaaacagcttatgatatgtcgataagctgttttcagcttacttctaaaagctctcca 14295531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 14331448 - 14331392
Alignment:
Q  394 aaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||||| ||||||| |||| ||||||||| ||  |||||||||||| ||||||||||    
T  14331448 aaaacagcttatgacatgtccataagctgatttcagcttattttcataagctctcca 14331392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 37489062 - 37489102
Alignment:
Q  385 gaacatatgaaaacaacttatgatatgttcataagctgttt 425  Q
    |||| |||||||||||||||||| ||||| |||||||||||    
T  37489062 gaacttatgaaaacaacttatgacatgttgataagctgttt 37489102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 37526184 - 37526244
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||||| ||||| ||||| ||||| |||||||||||  ||||||||| || ||||||||||    
T  37526184 tatgaatacaacctatgacatgttaataagctgttttcagcttatttccataagctctcca 37526244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 37588345 - 37588405
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||||| ||||| ||||| ||||| |||||||||||  ||||||||| || ||||||||||    
T  37588345 tatgaatacaacctatgaaatgttaataagctgttttcagcttatttccataagctctcca 37588405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 37690621 - 37690681
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||||| ||||| ||||| ||||| |||||||||||  ||||||||| || ||||||||||    
T  37690621 tatgaatacaacctatgacatgttaataagctgttttcagcttatttccataagctctcca 37690681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 383 - 453
Target Start/End: Complemental strand, 50952425 - 50952355
Alignment:
Q  383 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||| || ||||||| ||||||| |||||||||| |||||| |||||||||| || |||||||||||||    
T  50952425 gagaacgtacgaaaacagcttatgacatgttcataaactgttttaagcttatttccataagctctccaaga 50952355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 381 - 450
Target Start/End: Complemental strand, 21574584 - 21574515
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||||| | |||||||||||||||||| |||||||||||||| ||  ||||||||| || ||||||||||    
T  21574584 gggagagcttatgaaaacaacttatgacatgttcataagctgcttttagcttatttccataagctctcca 21574515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 450
Target Start/End: Complemental strand, 1816676 - 1816608
Alignment:
Q  382 ggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||||||||||||||| ||||||||| || |||||| |||||||  |||||||||| | ||||||||||    
T  1816676 ggagaacatatgaaaataacttatgacattttcataggctgttttcagcttattttgataagctctcca 1816608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 395 - 450
Target Start/End: Original strand, 3044249 - 3044304
Alignment:
Q  395 aaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    ||||||||||||| |||||||||||||||||  | |||||||||| ||||||||||    
T  3044249 aaacaacttatgacatgttcataagctgttttcaacttattttcataagctctcca 3044304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 383 - 453
Target Start/End: Original strand, 30573892 - 30573962
Alignment:
Q  383 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||| ||||||||||| |||||  |||||||||||||||||  ||||||| ||||  ||||||||||||    
T  30573892 gagaacttatgaaaacaaattatggcatgttcataagctgttttcagcttatgttcatcagctctccaaga 30573962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 21367762 - 21367689
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatat-gttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||| |||||||||| ||||||| || ||||| |||||||||  |||||||||||| ||| |||||||||    
T  21367762 gggagaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataagttctccaaga 21367689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 453
Target Start/End: Original strand, 24085314 - 24085386
Alignment:
Q  382 ggagaacatatgaaaacaacttatgata-tgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    ||||||| |||||||||| |||||| || |||||||| |||||||  |||||||||||| ||| |||||||||    
T  24085314 ggagaacttatgaaaacagcttatggtactgttcatacgctgttttcagcttattttcacaagttctccaaga 24085386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 455
Target Start/End: Complemental strand, 25925818 - 25925762
Alignment:
Q  399 aacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaagaaa 455  Q
    ||||||||| |||||||||||||||||  | |||||||||| |||||||||| ||||    
T  25925818 aacttatgacatgttcataagctgttttcaacttattttcataagctctccaggaaa 25925762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 36139960 - 36139900
Alignment:
Q  393 gaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    ||||||| ||||||| ||||||| |||||||||  |||||||||||| ||||||| |||||    
T  36139960 gaaaacagcttatgacatgttcacaagctgttttcagcttattttcataagctcttcaaga 36139900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 447
Target Start/End: Complemental strand, 36101650 - 36101596
Alignment:
Q  393 gaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctct 447  Q
    ||||||| ||||||| ||||||| |||||||||  |||||||||||| |||||||    
T  36101650 gaaaacagcttatgacatgttcacaagctgttttcagcttattttcataagctct 36101596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 37273185 - 37273143
Alignment:
Q  200 tttcaacttatttccttaagctctccaagatagcatatgaaaa 242  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||    
T  37273185 tttcaacttatttccataagttctccaagatagcttatgaaaa 37273143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 453
Target Start/End: Complemental strand, 47513749 - 47513675
Alignment:
Q  379 tcgggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    ||||||| || ||||||||||| |||||| | ||||||||| |||||  |  ||||||||| |||||||||||||    
T  47513749 tcgggaggacttatgaaaacaagttatgacacgttcataagttgttttcaatttattttcataagctctccaaga 47513675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 402517 - 402590
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatat-gttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||| |||||||||| ||||||| || |||||||||||||||  |||||| ||||| ||| ||| |||||    
T  402517 gggagaacgtatgaaaacagcttatgacattgttcataagctgttttcagcttaatttcacaagttcttcaaga 402590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 439
Target Start/End: Complemental strand, 5391964 - 5391915
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 439  Q
    |||||||||| ||||||| |||||||||||||||||  | ||||||||||    
T  5391964 tatgaaaacagcttatgacatgttcataagctgttttcaacttattttca 5391915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 453
Target Start/End: Complemental strand, 40665500 - 40665451
Alignment:
Q  404 atgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||| |||||||||||||||||  |||||||||| | |||||||||||||    
T  40665500 atgacatgttcataagctgttttcagcttatttttataagctctccaaga 40665451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 44237570 - 44237521
Alignment:
Q  98 cctgtttcaattggtttatttgagtttatctatttgcataagtacttgtg 147  Q
    ||||||| |||||||||||||||||||||||| |  |||||| |||||||    
T  44237570 cctgtttaaattggtttatttgagtttatctactgacataagcacttgtg 44237521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 425
Target Start/End: Complemental strand, 45541662 - 45541621
Alignment:
Q  384 agaacatatgaaaacaacttatgatatgttcataagctgttt 425  Q
    ||||| |||||||||| ||||||| |||||||||||||||||    
T  45541662 agaacttatgaaaacagcttatgacatgttcataagctgttt 45541621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 453
Target Start/End: Original strand, 47249465 - 47249534
Alignment:
Q  384 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    ||||| ||||||||| |||||||| ||||||||||| |||||   ||||||||||| |||  ||||||||    
T  47249465 agaacttatgaaaaccacttatgacatgttcataagttgtttttggcttattttcataagtcctccaaga 47249534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 2825192 - 2825152
Alignment:
Q  206 cttatttccttaagctctccaagatagcatatgaaaataac 246  Q
    ||||||| | |||||||||||||||||| ||||||||||||    
T  2825192 cttattttcataagctctccaagatagcttatgaaaataac 2825152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 22667449 - 22667413
Alignment:
Q  206 cttatttccttaagctctccaagatagcatatgaaaa 242  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  22667449 cttatttccgtaagctctccaagatagcttatgaaaa 22667413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 22724088 - 22724052
Alignment:
Q  206 cttatttccttaagctctccaagatagcatatgaaaa 242  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  22724088 cttatttccgtaagctctccaagatagcttatgaaaa 22724052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 450
Target Start/End: Complemental strand, 24281132 - 24281072
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    ||||||||||||||||||||| | |||||| |||||  | |||| ||||| ||||||||||    
T  24281132 tatgaaaacaacttatgatatctccataagttgttttcaacttactttcataagctctcca 24281072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 39723385 - 39723429
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttat 434  Q
    |||||||||| ||||||| |||||||||||||||||  |||||||    
T  39723385 tatgaaaacagcttatgacatgttcataagctgtttttagcttat 39723429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 49605781 - 49605833
Alignment:
Q  111 gtttatttgagtttatctatttgcataagtacttgtggaagtgtttgaaagag 163  Q
    ||||||||||||||||||  | |||||||||||||||  ||||||||| ||||    
T  49605781 gtttatttgagtttatcttctagcataagtacttgtgagagtgtttgagagag 49605833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 382 - 439
Target Start/End: Complemental strand, 30535656 - 30535599
Alignment:
Q  382 ggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 439  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||  || |||||||||    
T  30535656 ggagaacttatgaaaacaacttatgatatgttcgtaagctgttttcaggttattttca 30535599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 15740390 - 15740445
Alignment:
Q  384 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 439  Q
    ||||| |||||||||||||||||| |||||||||||||||||  | ||||||||||    
T  15740390 agaacttatgaaaacaacttatgacatgttcataagctgtttttaacttattttca 15740445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 25670571 - 25670634
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||||||||||||| ||||| ||||  |||||  |||||||||||| |||||||||||||    
T  25670571 tatgaaaacaacttatgacatgttaataaattgttttcagcttattttcacaagctctccaaga 25670634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 453
Target Start/End: Complemental strand, 21248011 - 21247947
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca-aaagctctccaaga 453  Q
    |||| ||| ||||||||| ||||||||||| ||||| |||||||||||||  |||||||||||||    
T  21248011 tatggaaataacttatgacatgttcataagttgttttaagcttattttcagtaagctctccaaga 21247947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 450
Target Start/End: Complemental strand, 46082121 - 46082061
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||||||||||||||||| |||  |||||| |||||  |||||||||||| ||||||||||    
T  46082121 tatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagctctcca 46082061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 435
Target Start/End: Complemental strand, 11048118 - 11048067
Alignment:
Q  384 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttatt 435  Q
    ||||| ||| |||||||||||||| |||||||||||||||||  ||||||||    
T  11048118 agaacttatcaaaacaacttatgacatgttcataagctgttttcagcttatt 11048067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 434
Target Start/End: Complemental strand, 19719098 - 19719047
Alignment:
Q  383 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttat 434  Q
    |||||| |||||||||||||||||| |||||||||| ||||||  |||||||    
T  19719098 gagaacttatgaaaacaacttatgacatgttcataaactgttttcagcttat 19719047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 25596084 - 25596042
Alignment:
Q  200 tttcaacttatttccttaagctctccaagatagcatatgaaaa 242  Q
    ||||||||||||| | |||||||||||||||||| ||||||||    
T  25596084 tttcaacttattttcataagctctccaagatagcttatgaaaa 25596042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 451
Target Start/End: Original strand, 36598341 - 36598402
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaa 451  Q
    |||| ||||| ||||||| |||||||||||||||||  |||||||||  ||| |||||||||    
T  36598341 tatggaaacatcttatgacatgttcataagctgttttcagcttatttcaaaacgctctccaa 36598402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 7244760 - 7244704
Alignment:
Q  395 aaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaa 451  Q
    |||||| |||||| ||| ||||||| |||||  |||||||||||| |||||||||||    
T  7244760 aaacaatttatgacatgctcataagttgttttcagcttattttcataagctctccaa 7244704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 434
Target Start/End: Complemental strand, 11047948 - 11047908
Alignment:
Q  394 aaaacaacttatgatatgttcataagctgtttaaagcttat 434  Q
    |||||||||||||| |||||||||||||||||  |||||||    
T  11047948 aaaacaacttatgacatgttcataagctgtttttagcttat 11047908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 383 - 439
Target Start/End: Complemental strand, 36538000 - 36537944
Alignment:
Q  383 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 439  Q
    |||||| |||| ||||||||||||| ||||||||||| |||||  ||||| ||||||    
T  36538000 gagaacttatggaaacaacttatgacatgttcataagttgtttttagctttttttca 36537944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 43219789 - 43219833
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttat 434  Q
    |||||||||| ||||||| |||||||||||||||||  |||||||    
T  43219789 tatgaaaacagcttatgacatgttcataagctgtttttagcttat 43219833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 381 - 450
Target Start/End: Complemental strand, 15120277 - 15120208
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    |||||| | |||| ||||||||||||| |||||||| |||||||| ||||||||||| | ||||||||||    
T  15120277 gggagagcttatggaaacaacttatgacatgttcattagctgttttaagcttattttgataagctctcca 15120208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 34652055 - 34652097
Alignment:
Q  200 tttcaacttatttccttaagctctccaagatagcatatgaaaa 242  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  34652055 tttcaacttatttccataagctctccaagatagcttatgaaaa 34652097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 16451213 - 16451140
Alignment:
Q  381 gggagaacatatgaaaacaacttatgata-tgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||| |||||||||||||||||| | ||||||| ||||||||  ||||||||||||  || |||||||||    
T  16451213 gggagaacttatgaaaacaacttatgacattgttcatgagctgttttcagcttattttcacgagttctccaaga 16451140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 384 - 448
Target Start/End: Complemental strand, 1647327 - 1647263
Alignment:
Q  384 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctc 448  Q
    ||||| |||||||||| ||||||| ||| |||||||||||||  ||||||||| || ||||||||    
T  1647327 agaacttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataagctctc 1647263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 8017528 - 8017456
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||| |||||||||| ||||||||||||||||||  |||||   || |||||||| ||| |||||||||    
T  8017528 gggagaacttatgaaaacagcttatgatatgttcataatttgttttctgcgtattttcataagttctccaaga 8017456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 16398449 - 16398489
Alignment:
Q  383 gagaacatatgaaaacaacttatgatatgttcataagctgt 423  Q
    ||||||||||||||||||||||||| |||| ||||||||||    
T  16398449 gagaacatatgaaaacaacttatgacatgtccataagctgt 16398489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 35379001 - 35379064
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||||| || ||||  |||||||||| |||||  |||||||||||| |||||||||||||    
T  35379001 tatgaaaacagctgatgacttgttcataagttgttttcagcttattttcataagctctccaaga 35379064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 16867790 - 16867748
Alignment:
Q  200 tttcaacttatttccttaagctctccaagatagcatatgaaaa 242  Q
    ||||||||||||||| |||||||||||||||||| | ||||||    
T  16867790 tttcaacttatttccataagctctccaagatagcttgtgaaaa 16867748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 28677635 - 28677705
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaa 451  Q
    |||||||| |||||||||| ||||||| || |||||||| |||||   |||||||| || |||||||||||    
T  28677635 gggagaacttatgaaaacagcttatgacattttcataagttgttttcggcttatttccataagctctccaa 28677705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 453
Target Start/End: Original strand, 34652026 - 34652084
Alignment:
Q  395 aaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    ||||||||||||| |||| ||||||||||||  | ||||||| || |||||||||||||    
T  34652026 aaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaaga 34652084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 4607020 - 4606947
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatat-gttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||| | |||||||||||||||| || |||||| ||||| ||  |||||||||||| ||| |||||||||    
T  4607020 gggagaacttgtgaaaacaacttatgacattgttcatgagctgcttttagcttattttcataagttctccaaga 4606947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 436
Target Start/End: Complemental strand, 13220525 - 13220472
Alignment:
Q  383 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattt 436  Q
    |||||| ||| ||||||||||||||  |||||||||||||||| || |||||||    
T  13220525 gagaacttataaaaacaacttatgacttgttcataagctgttttaaacttattt 13220472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 453
Target Start/End: Original strand, 14451037 - 14451098
Alignment:
Q  392 tgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||||||||||| |||  ||||||||||||  ||||||||| || ||||| |||||||    
T  14451037 tgaaaacaacttatgacatgaccataagctgttttcagcttatttccacaagctatccaaga 14451098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 442
Target Start/End: Original strand, 1494431 - 1494483
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaa 442  Q
    |||||||||| ||||||| |||| ||||| ||||||  |||||||||||||||    
T  1494431 tatgaaaacagcttatgacatgtccataaactgtttttagcttattttcaaaa 1494483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 1801762 - 1801722
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagct 421  Q
    |||||||| |||||||||| ||||||| |||||||||||||    
T  1801762 gggagaacttatgaaaacagcttatgacatgttcataagct 1801722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 385 - 437
Target Start/End: Original strand, 2091014 - 2091066
Alignment:
Q  385 gaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttatttt 437  Q
    |||| |||||| ||| ||||||||||| |||||||||||||  ||||||||||    
T  2091014 gaacttatgaatacagcttatgatatggtcataagctgttttcagcttatttt 2091066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 12313149 - 12313221
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||  |||||||||| ||||||  ||||||||||| || ||  | |||||||||| |||||||||||||    
T  12313149 gggagaatttatgaaaacagcttatgccatgttcataagttgatttcaccttattttcataagctctccaaga 12313221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 388 - 416
Target Start/End: Original strand, 15870283 - 15870311
Alignment:
Q  388 catatgaaaacaacttatgatatgttcat 416  Q
    |||||||||||||||||||||||||||||    
T  15870283 catatgaaaacaacttatgatatgttcat 15870311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 383 - 451
Target Start/End: Complemental strand, 24347814 - 24347746
Alignment:
Q  383 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaa 451  Q
    |||||| ||||||| |||||||||||| ||||||||||  | |  |||||||||||| ||| |||||||    
T  24347814 gagaacttatgaaagcaacttatgataggttcataagccatattcagcttattttcataagttctccaa 24347746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 453
Target Start/End: Complemental strand, 36043990 - 36043926
Alignment:
Q  390 tatgaaaacaacttatgatat-gttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    ||||||||||||||| || || |||||||||||||||  |||| | ||||| |||||||||||||    
T  36043990 tatgaaaacaacttacgacattgttcataagctgtttttagctcaatttcataagctctccaaga 36043926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 43808509 - 43808473
Alignment:
Q  311 tatatgatacgcgcttatgatataagcacttaattaa 347  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  43808509 tatatgatacgcgcttatgctataaacacttaattaa 43808473  T

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Target: scaffold0608 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 383 - 439
Target Start/End: Original strand, 9615 - 9671
Alignment:
Q  383 gagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttca 439  Q
    |||||| |||||||||||||||| | |||||||||||||||||  ||||||||||||    
T  9615 gagaacttatgaaaacaacttattacatgttcataagctgtttttagcttattttca 9671  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 20936214 - 20936274
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctcca 450  Q
    ||||||||||||||||||||||||||||||||||||  | ||||||| || || |||||||    
T  20936214 tatgaaaacaacttatgatatgttcataagctgttttcaccttatttccataatctctcca 20936274  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 22662223 - 22662278
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattt 436  Q
    |||||||| |||||||| ||||||||||||||||||||||| |||  |||||||||    
T  22662223 gggagaacttatgaaaaaaacttatgatatgttcataagctattttcagcttattt 22662278  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 394 - 444
Target Start/End: Complemental strand, 30632037 - 30631987
Alignment:
Q  394 aaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagc 444  Q
    |||||||||||||  ||||||||||||||||| |||||||||| |||||||    
T  30632037 aaaacaacttatggcatgttcataagctgttttaagcttatttccaaaagc 30631987  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 447
Target Start/End: Complemental strand, 679803 - 679746
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctct 447  Q
    |||||||||| |||||||||||||||||| ||||||  ||| |||||||| |||||||    
T  679803 tatgaaaacatcttatgatatgttcataaactgttttcagcatattttcataagctct 679746  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 453
Target Start/End: Original strand, 30066745 - 30066814
Alignment:
Q  384 agaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||| ||||||||||| ||||| |||||||||||| ||||||  ||||| |||| | |||||||||||||    
T  30066745 agaaaatatgaaaacagcttataatatgttcataatctgttttcagcttgtttttataagctctccaaga 30066814  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 453
Target Start/End: Original strand, 17822841 - 17822913
Alignment:
Q  382 ggagaacatatgaaaacaacttatgata-tgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||||||||||||| ||||||| | | |||||||||| |||  |||||||||||| ||| |||||||||    
T  17822841 ggagaacatatgaaaacagcttatgacatttttcataagctttttttagcttattttcataagttctccaaga 17822913  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 421
Target Start/End: Original strand, 22666702 - 22666742
Alignment:
Q  381 gggagaacatatgaaaacaacttatgatatgttcataagct 421  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  22666702 gggagaacttatgaaaaaaacttatgatatgttcataagct 22666742  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 425
Target Start/End: Complemental strand, 1966026 - 1965991
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgttt 425  Q
    |||||||||||||||||| |||||||||||||||||    
T  1966026 tatgaaaacaacttatgacatgttcataagctgttt 1965991  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 453
Target Start/End: Complemental strand, 2996658 - 2996595
Alignment:
Q  390 tatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctccaaga 453  Q
    |||||||||||||||||| |||| |||||||| |||  | |||||||||| | |||||||||||    
T  2996658 tatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaaga 2996595  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 25571353 - 25571298
Alignment:
Q  382 ggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttatttt 437  Q
    ||||||| |||| |||||  ||||||||||||||||||||||||  ||||||||||    
T  25571353 ggagaacttatggaaacagtttatgatatgttcataagctgttttcagcttatttt 25571298  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 54462156 - 54462199
Alignment:
Q  228 gatagcatatgaaaataacatatgaaaatagtttgtctttattt 271  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||    
T  54462156 gatagcttatgaaaacaacatatgaaaatagtttgactttattt 54462199  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 448
Target Start/End: Complemental strand, 1137805 - 1137739
Alignment:
Q  382 ggagaacatatgaaaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctctc 448  Q
    ||||||| |||||||||| ||||||| ||||||||||| |||||  || |||||| || ||||||||    
T  1137805 ggagaacttatgaaaacatcttatgacatgttcataagttgttttcagtttatttccataagctctc 1137739  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 28300318 - 28300362
Alignment:
Q  200 tttcaacttatttccttaagctctccaagatagcatatgaaaata 244  Q
    ||||||||||||| | |||||||| ||||||||| ||||||||||    
T  28300318 tttcaacttattttcataagctcttcaagatagcctatgaaaata 28300362  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 29263450 - 29263398
Alignment:
Q  395 aaacaacttatgatatgttcataagctgtttaaagcttattttcaaaagctct 447  Q
    ||||| ||||||||||||||||||| |||||  ||||||||| || |||||||    
T  29263450 aaacagcttatgatatgttcataagttgttttcagcttatttccacaagctct 29263398  T

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