View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14602_low_10 (Length: 264)
Name: NF14602_low_10
Description: NF14602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14602_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 38467220 - 38466981
Alignment:
| Q |
1 |
gattcaattagggtaggatacatctttatatagcgatcccaagttaactaacataacaaatttccacctaatcataactaacttcggattacattaaaca |
100 |
Q |
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| T |
38467220 |
gattcaattagggtaggatacatctttatatagtgatcccaagttaactaacataacaaatttccacctaatcataactaacctcggattacattaaaca |
38467121 |
T |
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| Q |
101 |
atttctaacaaatctcctaccatatctaacaattattgcagtttgcatgaactatggacattttttaattgactaatgtcaacgagtcacacatcggaca |
200 |
Q |
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| T |
38467120 |
atttctaacaaatctcctaccatatctaacaattattgcagtttgcatgaactatggacattttttaattgactaatgtcaacgagtc---------aca |
38467030 |
T |
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| Q |
201 |
gaaatcgtggtttctgaggtgatgattgcctcacttataaatacattgt |
249 |
Q |
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| T |
38467029 |
gaaatcgtggtttctgaggtgatgattgcctcacttataaatacattgt |
38466981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 16787651 - 16787718
Alignment:
| Q |
49 |
taacataacaaatttccacctaatcataactaacttcggattacattaaacaatttctaacaaatctc |
116 |
Q |
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| T |
16787651 |
taacataacaaattttcacctaatcataattaacttgaaactaccttaaacagtttctaacaaatctc |
16787718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 25953526 - 25953565
Alignment:
| Q |
46 |
aactaacataacaaatttccacctaatcataactaacttc |
85 |
Q |
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| T |
25953526 |
aactaacctaacaaatttccacctaatcatatctaacttc |
25953565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 46959022 - 46959068
Alignment:
| Q |
39 |
ccaagttaactaacataacaaatttccacctaatcataactaacttc |
85 |
Q |
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| T |
46959022 |
ccaaggtaactaatctaacaaacttccacctaatcataactaacttc |
46959068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 29611942 - 29612022
Alignment:
| Q |
5 |
caattagggtaggatacatctttatatagcgatcccaagttaactaacataacaaatttccacctaatcataactaacttc |
85 |
Q |
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| T |
29611942 |
caattacggtaggatacacctttatattgtgatcccaagttaactaacataataaacttccatctaatcataattaacttc |
29612022 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 29609940 - 29609984
Alignment:
| Q |
41 |
aagttaactaacataacaaatttccacctaatcataactaacttc |
85 |
Q |
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| T |
29609940 |
aagttaactgacataacaaattttcacctaatcacaactaacttc |
29609984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 17236575 - 17236653
Alignment:
| Q |
7 |
attagggtaggatacatctttatatagcgatcccaagttaactaacataacaaatttccacctaatcataactaacttc |
85 |
Q |
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| T |
17236575 |
attagagtaagatatacctttatacagtgatcccaaggtaactaacataattaacttccacctaatcataactaacttc |
17236653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 17236506 - 17236556
Alignment:
| Q |
27 |
tatatagcgatcccaagttaactaacataacaaatttccacctaatcataa |
77 |
Q |
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| T |
17236506 |
tatatagtgatcccaaggtaactaacataactaacttccacctaataataa |
17236556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 41423498 - 41423411
Alignment:
| Q |
14 |
taggatacatctttatatagcgatcccaagttaactaacataacaaatttccacctaatcataactaacttcggattacattaaacaat |
102 |
Q |
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| T |
41423498 |
taggataca-ctttatatagtgatcctaagacaactaatataaccaacttgcaaccaatcataactaacttgtaattacattaaacaat |
41423411 |
T |
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