View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14602_low_11 (Length: 258)
Name: NF14602_low_11
Description: NF14602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14602_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 21558386 - 21558608
Alignment:
| Q |
18 |
gaaaatgaatatcatgaatgtgtatgaagttccaatagcatcagtcaatgatagaaaagattgtgcaacaatgagatttgaaatccaatttgatgttgac |
117 |
Q |
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| T |
21558386 |
gaaaatgaatatcatgaatgtgtaggaagttccaatagcatcagtcaatgatagaaaagattgtgcaacaatgagatttgaaatccaatttgatgttgac |
21558485 |
T |
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| Q |
118 |
gcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaataggatgtata |
217 |
Q |
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| T |
21558486 |
gcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaataggatgtata |
21558585 |
T |
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| Q |
218 |
gtgaaagaccgattagtgctagc |
240 |
Q |
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| T |
21558586 |
gtgaaagaccgattagtgctagc |
21558608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 21491919 - 21492028
Alignment:
| Q |
111 |
tgttgacgcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaatagg |
210 |
Q |
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| T |
21491919 |
tgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaacccatggaactgttcccattccaggcgagaagaatatg |
21492018 |
T |
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| Q |
211 |
atgtatagtg |
220 |
Q |
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| T |
21492019 |
atgtagagtg |
21492028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 33120091 - 33119994
Alignment:
| Q |
111 |
tgttgacgcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaata |
208 |
Q |
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| T |
33120091 |
tgttgatgctattcctccacatattcctctataccttaaagggtgtatttcagagttgataacccatggaaccgttcccattcctggtgaaaagaata |
33119994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 33116879 - 33116784
Alignment:
| Q |
111 |
tgttgacgcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaa |
206 |
Q |
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| T |
33116879 |
tgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagagtttatgacccatggaacagtccccattccaggtgaaaagaa |
33116784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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