View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14602_low_15 (Length: 222)
Name: NF14602_low_15
Description: NF14602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14602_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 65 - 206
Target Start/End: Original strand, 28058472 - 28058614
Alignment:
| Q |
65 |
tacaagacagttttgtacggatgaattaggctaaatataaaaccaataatatgttatcaaatctagaagttgctttccttcatcac--tgtgctgctgtg |
162 |
Q |
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| T |
28058472 |
tacaagatagttttgtaaggatgaattaggctaaatataaaaccaataatatgttatcaaatctagaagttgctttccttcatcactgtgtgctgctgtg |
28058571 |
T |
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| Q |
163 |
tatgaagactggttagccataggaataaaatgctttgaaaatcc |
206 |
Q |
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| T |
28058572 |
tatgaagactggttagccataggaat-aaatgctttgaaaatcc |
28058614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 28057943 - 28057975
Alignment:
| Q |
35 |
ctgaatgttgaaagcaacaaacctgacaattac |
67 |
Q |
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| T |
28057943 |
ctgaatgttgaaagcaacaaacctgacaattac |
28057975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 28065115 - 28065143
Alignment:
| Q |
39 |
atgttgaaagcaacaaacctgacaattac |
67 |
Q |
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| T |
28065115 |
atgttgaaagcaacaaacctgacaattac |
28065143 |
T |
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