View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14602_low_4 (Length: 574)

Name: NF14602_low_4
Description: NF14602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14602_low_4
NF14602_low_4
[»] chr1 (21 HSPs)
chr1 (265-568)||(26453967-26454272)
chr1 (111-265)||(26454346-26454500)
chr1 (382-546)||(26445732-26445907)
chr1 (266-346)||(26445968-26446048)
chr1 (111-193)||(26446240-26446323)
chr1 (460-535)||(46216545-46216619)
chr1 (460-535)||(51289811-51289885)
chr1 (201-265)||(26449431-26449495)
chr1 (460-535)||(29425186-29425260)
chr1 (460-535)||(46043656-46043730)
chr1 (460-535)||(46217169-46217243)
chr1 (460-535)||(48749911-48749985)
chr1 (460-537)||(3940098-3940175)
chr1 (191-265)||(26446122-26446196)
chr1 (482-535)||(29424532-29424585)
chr1 (460-537)||(45943579-45943655)
chr1 (482-535)||(48751280-48751333)
chr1 (391-426)||(26445977-26446012)
chr1 (460-535)||(51289014-51289088)
chr1 (307-344)||(26445897-26445934)
chr1 (382-426)||(26445904-26445948)
[»] chr8 (6 HSPs)
chr8 (460-535)||(21406420-21406494)
chr8 (460-535)||(21800912-21800986)
chr8 (460-535)||(44727358-44727432)
chr8 (460-537)||(38135461-38135537)
chr8 (460-535)||(44726647-44726721)
chr8 (265-309)||(29673165-29673209)
[»] chr7 (3 HSPs)
chr7 (460-535)||(40142510-40142584)
chr7 (460-532)||(7611605-7611676)
chr7 (460-537)||(42024939-42025015)
[»] chr6 (5 HSPs)
chr6 (460-535)||(9048939-9049013)
chr6 (460-535)||(32222679-32222753)
chr6 (460-535)||(9048237-9048311)
chr6 (460-535)||(32223368-32223442)
chr6 (460-535)||(35242059-35242133)
[»] chr4 (4 HSPs)
chr4 (460-535)||(17343261-17343335)
chr4 (460-537)||(9473003-9473079)
chr4 (464-535)||(19994142-19994212)
chr4 (495-537)||(9473547-9473589)
[»] chr2 (3 HSPs)
chr2 (460-535)||(43258585-43258659)
chr2 (460-535)||(43257869-43257943)
chr2 (495-535)||(42176172-42176212)
[»] chr5 (5 HSPs)
chr5 (482-537)||(17965993-17966048)
chr5 (460-537)||(25983509-25983585)
chr5 (460-535)||(1396413-1396487)
chr5 (495-535)||(17966775-17966815)
chr5 (482-535)||(1397254-1397307)
[»] chr3 (2 HSPs)
chr3 (460-535)||(54964771-54964845)
chr3 (460-537)||(33471611-33471687)
[»] scaffold0012 (1 HSPs)
scaffold0012 (482-535)||(232674-232727)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 265 - 568
Target Start/End: Complemental strand, 26454272 - 26453967
Alignment:
Q  265 aggacaaagaaacaaaacaacacggctaggtattcggttttggtaaaacatacaacttacacactatttattgagtgattctgtagggaccactatttta 364  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26454272 aggataaagaaacaaaacaacacggctaggtattcggttttggtaaaacatacaacttacacactatttattgagtgattctgtagggaccactatttta 26454173  T
Q  365 aaacatacaacttgcacattgagtgattttggtaaaacatgcaacttgcacactatttattggtaaaatgtaatgttcttgtttttaattc--tgtgttt 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  26454172 aaacatacaacttgcacattgagtgattttggtaaaacatgcaacttgcacactatttattggtaaaacgtaatgttcttgtttttaattctttgtgttt 26454073  T
Q  463 aatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtattaaacgtgatagtgggatgattgatctct 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26454072 aatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtattaaacgtgatagtgggatgattgatctct 26453973  T
Q  563 tcactt 568  Q
    ||||||    
T  26453972 tcactt 26453967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 111 - 265
Target Start/End: Complemental strand, 26454500 - 26454346
Alignment:
Q  111 atcaaatgtacaccaacatggatcatacacagcacttactcaaaaccacttcgatcgatctgatcttaaatatattgaagaacgcccaggttaaagaaaa 210  Q
    ||||||| ||||||||||||||||| ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26454500 atcaaatatacaccaacatggatcagacatagcactgacacaaaaccacttcgatcgatctgatcttaaatatattgaagaacgcccaggttaaagaaaa 26454401  T
Q  211 ttgtcgaatgtgaaattgaaaaagaccatacctttgcctgttgagttattggtta 265  Q
    |||||||| |||||||||||||||| |||||||||||||||| ||||||||||||    
T  26454400 ttgtcgaaagtgaaattgaaaaagatcatacctttgcctgtttagttattggtta 26454346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 382 - 546
Target Start/End: Complemental strand, 26445907 - 26445732
Alignment:
Q  382 attgagtgattttggtaaaa-catgcaacttgcacact---atttattggtaaaatgtaatgttcttgtttttaattc--tgtgtttaatgt-----aat 470  Q
    |||||||||||||||||||| |||||||| ||||||||   |||||||||||||| ||||||||||||||||| ||||  || ||| |||||     |||    
T  26445907 attgagtgattttggtaaaaacatgcaacctgcacactctaatttattggtaaaacgtaatgttcttgttttttattctttgcgttaaatgtaatccaat 26445808  T
Q  471 ccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtattaaacgtgatagt 546  Q
    ||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  26445807 ccaatacattaaaaagatgattgattatgttttctcatagaatcacaatgaattaaatagtattagacgtgatagt 26445732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 26446048 - 26445968
Alignment:
Q  266 ggacaaagaaacaaaacaacacggctaggtattcggttttggtaaaacatacaacttacacactatttattgagtgattct 346  Q
    |||||||||||||||| | || || |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  26446048 ggacaaagaaacaaaatagcatggttaggtattaggttttggtaaaacatacaacttgcacactatttattgagtgattct 26445968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 26446323 - 26446240
Alignment:
Q  111 atcaaatgtacaccaacatggatcatacacagcacttactcaaa-accacttcgatcgatctgatcttaaatatattgaagaac 193  Q
    ||||||||||||||||||||||||| ||||| || | | ||| | |||||||| ||||||||||||||||||||||| ||||||    
T  26446323 atcaaatgtacaccaacatggatcagacacaacattgattcagacaccacttcaatcgatctgatcttaaatatattaaagaac 26446240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 460 - 535
Target Start/End: Complemental strand, 46216619 - 46216545
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| |||| |||| || | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  46216619 tttaatgtaatccaaaacattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaatagtatta 46216545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 460 - 535
Target Start/End: Original strand, 51289811 - 51289885
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| |||| |||| || | ||| ||||||||||||||||||||||||| |||||||||||||||    
T  51289811 tttaatgtaatccaaaacattaaaa-gagtgttgattatgttttctcataaaatcacaataaattaaatagtatta 51289885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 26449431 - 26449495
Alignment:
Q  201 ttaaagaaaattgtcgaatgtgaaattgaaaaagaccatacctttgcctgttgagttattggtta 265  Q
    |||||||||||||||||| |||||| ||||||||| ||| | |||| ||||||||||||||||||    
T  26449431 ttaaagaaaattgtcgaaagtgaaaatgaaaaagatcatgcatttgtctgttgagttattggtta 26449495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 535
Target Start/End: Original strand, 29425186 - 29425260
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    |||||| |||||||| |||| |||| || | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  29425186 tttaatataatccaaaacattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaatagtatta 29425260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 535
Target Start/End: Complemental strand, 46043730 - 46043656
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| |||| |||| || | ||| |||||||| |||||||||||||||||||||||||| |||||    
T  46043730 tttaatgtaatccaaaacattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaataatatta 46043656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 535
Target Start/End: Original strand, 46217169 - 46217243
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||| ||| |||| |||| || | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  46217169 tttaatgtaattcaaaacattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaatagtatta 46217243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 535
Target Start/End: Complemental strand, 48749985 - 48749911
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| | || |||| || | ||| |||||||| |||||||||||||||||||||||||| |||||    
T  48749985 tttaatgtaatccaaaatattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaataatatta 48749911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 537
Target Start/End: Complemental strand, 3940175 - 3940098
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaa-tgaattaaatagtattaaa 537  Q
    ||||||||||| ||| |||| |||| || | ||| |||||||| ||||||||||||||| |||||||||||||||||||    
T  3940175 tttaatgtaattcaaaacattaaaa-gagtgttgattatgtttcctcataaaatcacaaatgaattaaatagtattaaa 3940098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 26446196 - 26446122
Alignment:
Q  191 aacgcccaggttaaagaaaattgtcgaatgtgaaattgaaaaagaccatacctttgcctgttgagttattggtta 265  Q
    |||| |||| ||||| |||||||||||| ||||||||||||| || |||||||||| | |||||||  |||||||    
T  26446196 aacggccagattaaataaaattgtcgaaagtgaaattgaaaaggatcatacctttgtcagttgagtggttggtta 26446122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 535
Target Start/End: Complemental strand, 29424585 - 29424532
Alignment:
Q  482 aaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    |||||| | ||| |||||||| |||||||||||||||||||||||||| |||||    
T  29424585 aaaagagtgttgattatgtttcctcataaaatcacaatgaattaaataatatta 29424532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 537
Target Start/End: Original strand, 45943579 - 45943655
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtattaaa 537  Q
    ||||||||||||||| |||| |||| ||   ||| |||||||| ||| || |||||||||||||||||||||||||||    
T  45943579 tttaatgtaatccaagacattaaaa-gaccgttgattatgtttcctcgtagaatcacaatgaattaaatagtattaaa 45943655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 535
Target Start/End: Original strand, 48751280 - 48751333
Alignment:
Q  482 aaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    |||||| | ||| |||||||| ||| ||||||||||||||||||||||||||||    
T  48751280 aaaagagtgttgattatgtttcctcttaaaatcacaatgaattaaatagtatta 48751333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 426
Target Start/End: Complemental strand, 26446012 - 26445977
Alignment:
Q  391 ttttggtaaaacatgcaacttgcacactatttattg 426  Q
    |||||||||||||| |||||||||||||||||||||    
T  26446012 ttttggtaaaacatacaacttgcacactatttattg 26445977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 535
Target Start/End: Complemental strand, 51289088 - 51289014
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| | || |||| || | ||| |||||||| || |||||||||||||||||||| ||||||||    
T  51289088 tttaatgtaatccaaaatattaaaa-gagtgttgattatgtttccttataaaatcacaatgaattaattagtatta 51289014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 344
Target Start/End: Complemental strand, 26445934 - 26445897
Alignment:
Q  307 gtaaaacatacaacttacacactatttattgagtgatt 344  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  26445934 gtaaaacatacaacttgcacactattgattgagtgatt 26445897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 26445948 - 26445904
Alignment:
Q  382 attgagtgattttggtaaaacatgcaacttgcacactatttattg 426  Q
    ||||||||||| | ||||||||| |||||||||||||||| ||||    
T  26445948 attgagtgattcttgtaaaacatacaacttgcacactattgattg 26445904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 460 - 535
Target Start/End: Complemental strand, 21406494 - 21406420
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| |||| |||| || | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  21406494 tttaatgtaatccaaaacattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaatagtatta 21406420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 460 - 535
Target Start/End: Complemental strand, 21800986 - 21800912
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| |||| |||| || | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  21800986 tttaatgtaatccaaaacattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaatagtatta 21800912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 460 - 535
Target Start/End: Original strand, 44727358 - 44727432
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| |||| |||| || | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  44727358 tttaatgtaatccaaaacattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaatagtatta 44727432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 460 - 537
Target Start/End: Original strand, 38135461 - 38135537
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtattaaa 537  Q
    ||||||||||||||| |||| |||| || | ||| |||||||| |||||||||||||||| |||||||||||||||||    
T  38135461 tttaatgtaatccaaaacattaaaa-gagtgttgattatgtttcctcataaaatcacaatcaattaaatagtattaaa 38135537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 535
Target Start/End: Complemental strand, 44726721 - 44726647
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    |||||| |||||||| |||| |||| || | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  44726721 tttaatataatccaaaacattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaatagtatta 44726647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 29673209 - 29673165
Alignment:
Q  265 aggacaaagaaacaaaacaacacggctaggtattcggttttggta 309  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||    
T  29673209 aggacaaagaaacaaaacaacacgactaggaattaggttttggta 29673165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 460 - 535
Target Start/End: Original strand, 40142510 - 40142584
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| |||| |||| || | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  40142510 tttaatgtaatccaaaacattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaatagtatta 40142584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 460 - 532
Target Start/End: Original strand, 7611605 - 7611676
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagta 532  Q
    ||||||||||||||| |||| |||| || | ||| |||||||||| |||||||||||||||||||||||||||    
T  7611605 tttaatgtaatccaaaacattaaaa-gagtgttgattatgttttcccataaaatcacaatgaattaaatagta 7611676  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 460 - 537
Target Start/End: Original strand, 42024939 - 42025015
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtattaaa 537  Q
    ||||||||||||||| |||| |||| || | ||| |||||||| |||||| ||| |||||||||||||||||||||||    
T  42024939 tttaatgtaatccaaaacattaaaa-gagtgttgattatgtttactcatagaattacaatgaattaaatagtattaaa 42025015  T

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Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 460 - 535
Target Start/End: Original strand, 9048939 - 9049013
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| |||| |||| || | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  9048939 tttaatgtaatccaaaacattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaatagtatta 9049013  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 460 - 535
Target Start/End: Complemental strand, 32222753 - 32222679
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| |||| |||| || | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  32222753 tttaatgtaatccaaaacattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaatagtatta 32222679  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 535
Target Start/End: Complemental strand, 9048311 - 9048237
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| | || |||| || | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  9048311 tttaatgtaatccaaaatattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaatagtatta 9048237  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 535
Target Start/End: Original strand, 32223368 - 32223442
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| | || |||| || | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  32223368 tttaatgtaatccaaaatattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaatagtatta 32223442  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 535
Target Start/End: Complemental strand, 35242133 - 35242059
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| |||| |||| || | ||| ||||||||  || |||||||||||||| |||||||||||||    
T  35242133 tttaatgtaatccaaaacattaaaa-gagtgttgattatgtttcttcgtaaaatcacaatgagttaaatagtatta 35242059  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 460 - 535
Target Start/End: Original strand, 17343261 - 17343335
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| |||| |||| || | ||| ||||||||||| |||||||||||||||||||||||||||||    
T  17343261 tttaatgtaatccaaaacattaaaa-gagtgttgattatgttttctaataaaatcacaatgaattaaatagtatta 17343335  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 460 - 537
Target Start/End: Complemental strand, 9473079 - 9473003
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtattaaa 537  Q
    ||||||||||||||| | || |||| || | ||| |||||||| ||||||||||||||||||||||||||||||||||    
T  9473079 tttaatgtaatccaagatattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaatagtattaaa 9473003  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 464 - 535
Target Start/End: Original strand, 19994142 - 19994212
Alignment:
Q  464 atgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||| |||| |||| || | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  19994142 atgtaatccaaaacattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaatagtatta 19994212  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 9473547 - 9473589
Alignment:
Q  495 ttatgttttctcataaaatcacaatgaattaaatagtattaaa 537  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  9473547 ttatgtttcctcatagaatcacaatgaattaaatagtattaaa 9473589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 460 - 535
Target Start/End: Original strand, 43258585 - 43258659
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| |||| |||| || | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  43258585 tttaatgtaatccaaaacattaaaa-gaatgttgattatgtttcctcataaaatcacaatgaattaaatagtatta 43258659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 535
Target Start/End: Complemental strand, 43257943 - 43257869
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    |||||| |||||||| |||| |||| || ||||| ||||||||  |||||||||||||||||||||||||||||||    
T  43257943 tttaatataatccaaaacattaaaa-gagtattgattatgtttcatcataaaatcacaatgaattaaatagtatta 43257869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 535
Target Start/End: Complemental strand, 42176212 - 42176172
Alignment:
Q  495 ttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  42176212 ttatgtttccttataaaatcacaatgaattaaatagtatta 42176172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 537
Target Start/End: Complemental strand, 17966048 - 17965993
Alignment:
Q  482 aaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtattaaa 537  Q
    |||||| | ||| |||||||| ||||||||||||||||||||||||||||||||||    
T  17966048 aaaagagtgttgattatgtttcctcataaaatcacaatgaattaaatagtattaaa 17965993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 460 - 537
Target Start/End: Complemental strand, 25983585 - 25983509
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtattaaa 537  Q
    ||||||||||||||| |||| |||| || | ||| |||| ||| |||||| |||||||||||||||||||||||||||    
T  25983585 tttaatgtaatccaagacattaaaa-gagtgttgattatttttcctcatagaatcacaatgaattaaatagtattaaa 25983509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 535
Target Start/End: Complemental strand, 1396487 - 1396413
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| |||| |||| || | ||| |||| ||| |||||||||| |||||||||||||||||||||    
T  1396487 tttaatgtaatccaaaacattaaaa-gagtgttgattatatttcctcataaaattacaatgaattaaatagtatta 1396413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 535
Target Start/End: Original strand, 17966775 - 17966815
Alignment:
Q  495 ttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  17966775 ttatgtttccttataaaatcacaatgaattaaatagtatta 17966815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 535
Target Start/End: Original strand, 1397254 - 1397307
Alignment:
Q  482 aaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    |||||| | ||| |||||||| || ||||||||||||||||||||||| |||||    
T  1397254 aaaagagtgttgattatgtttccttataaaatcacaatgaattaaatattatta 1397307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 535
Target Start/End: Original strand, 54964771 - 54964845
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    ||||||||||||||| | || |||| || | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  54964771 tttaatgtaatccaaaatattaaaa-gagtgttgattatgtttcctcataaaatcacaatgaattaaatagtatta 54964845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 537
Target Start/End: Complemental strand, 33471687 - 33471611
Alignment:
Q  460 tttaatgtaatccaatacatcaaaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtattaaa 537  Q
    |||||| |||||||| |||| |||| || | ||| |||||||| |||||| ||||||||||||||||||| |||||||    
T  33471687 tttaatataatccaagacattaaaa-gagtgttgattatgtttcctcatagaatcacaatgaattaaataatattaaa 33471611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 535
Target Start/End: Complemental strand, 232727 - 232674
Alignment:
Q  482 aaaagattattgtttatgttttctcataaaatcacaatgaattaaatagtatta 535  Q
    |||||| | ||| ||||||||  || ||||||||||||||||||||||||||||    
T  232727 aaaagagtgttgattatgtttcatcttaaaatcacaatgaattaaatagtatta 232674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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