View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14602_low_6 (Length: 392)
Name: NF14602_low_6
Description: NF14602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14602_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 38369054 - 38368879
Alignment:
| Q |
1 |
agtaaaagataaggtgagccatgtgaggaaagttttatattctctttttaatgaatatgccaacaaagttgcatcaatttcaattagattacctgtgagg |
100 |
Q |
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| T |
38369054 |
agtaaaagataaggtgagccatgtgaggaaagttttatattctctttttaatgaatatgccaacaaagttgcatcaatttcaattagattacctgtgagg |
38368955 |
T |
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| Q |
101 |
gattctcgttttacttctcgggaaaggaaaacagactttctttcggaatatcgtgtatgtctatgttttgttcagc |
176 |
Q |
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| T |
38368954 |
gattctcgttttacttctcgggaaaggaaaacagactttctttcggaatatcgtgtatgtctatgttttgttcagc |
38368879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 223 - 378
Target Start/End: Complemental strand, 38368832 - 38368677
Alignment:
| Q |
223 |
gtctttgattcaaattgtcataggaatatggtgaaaaagagaggctagaaagatatgcagggggtgtgattcaacttgatctttatttgaaagagagaga |
322 |
Q |
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| T |
38368832 |
gtctttgattcaaattgtcataggaatatgttgaaaaagagaggctagaaagatatgcaggtggtgtgactcaacttgatctttatttgaaagagagaga |
38368733 |
T |
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| Q |
323 |
cagaggttattatgtaaatgctttacaatattggaaagacaatgagaaagagtatt |
378 |
Q |
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| T |
38368732 |
cagaggttattatgtaaatgctttacaatattggaaagacaatgagaaagagtatt |
38368677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 318
Target Start/End: Complemental strand, 38373557 - 38373462
Alignment:
| Q |
223 |
gtctttgattcaaattgtcataggaatatggtgaaaaagagaggctagaaagatatgcagggggtgtgattcaacttgatctttatttgaaagaga |
318 |
Q |
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| T |
38373557 |
gtctttgatttaaattgtcataggaatatcttgaaataaagaggcaagaaaagtatgtagatggtgtgagtcaacttgatctttatttggaagaga |
38373462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 38378729 - 38378646
Alignment:
| Q |
235 |
aattgtcataggaatatggtgaaaaagagaggctagaaagatatgcagggggtgtgattcaacttgatctttatttgaaagaga |
318 |
Q |
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| T |
38378729 |
aattttcataggcatatcttgaaaaaaagaggcaaaaaaaatatgcaggtggtgtgactcaacttgatctttatttgaaagaga |
38378646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 38378958 - 38378892
Alignment:
| Q |
1 |
agtaaaagataaggtgagccatgtgaggaaagttttatattctctttttaatgaatatgccaacaaa |
67 |
Q |
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| T |
38378958 |
agtaaaagataaggtgaacaatgtgaggaaagctttccatactctttttaatgaatatgccaacaaa |
38378892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 38373791 - 38373715
Alignment:
| Q |
1 |
agtaaaagataaggtgagccatgtgaggaaagttttatattctctttttaatgaatatgccaacaaagttgcatcaa |
77 |
Q |
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||||||||||||||||||| || |||||||| | ||||| |||||||||||||||||||| ||||| |||||||| |
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| T |
38373791 |
agtaaaagataaggtgagcagtgcgaggaaagctgtatatgctctttttaatgaatatgccgacaaaagtgcatcaa |
38373715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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