View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14603_high_1 (Length: 646)
Name: NF14603_high_1
Description: NF14603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14603_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 17 - 629
Target Start/End: Original strand, 45344960 - 45345572
Alignment:
| Q |
17 |
cttggtcaacagatatatgtgccgagtttgatgaagaactattggcttgatcattccccaccagactgtctcctttgcccaaattaggatggttttgttg |
116 |
Q |
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| T |
45344960 |
cttggtcagcagatatatgtgccgagtttgatgaagaactattggcttgatcattccccaccagactgtctcctttgcccaaattaggatggttttgttg |
45345059 |
T |
|
| Q |
117 |
gtcttccatctcactttcaaggtcaccaccacaaattgcttcgacaggtcgaacaatatcctgtctcagtgataagttttctctatctgaaacagttttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45345060 |
gtcttccatctcactttcaaggtcaccaccacaaattgcttcgacaggtcgaacaatatcctgtctcagtgataagttttctcgatctgaaacagttttt |
45345159 |
T |
|
| Q |
217 |
tggttttgatcacctccattatcaaaatgacaaccacttaaaaccaaattttcatccctttgtttaccattacctgctacttctctgaaccttgattcta |
316 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45345160 |
tggttttgatcacctccattatcaaaatgacagccacttaaaaccaaattttcatccctttgtttaccattacctgctacttctctgaaccttgattcta |
45345259 |
T |
|
| Q |
317 |
ctctgagattattcaggattccttgagttctttcttgtggcaaagacagcacactgcttggtggcatccatgacttttcctgtctttctgtttgcaaata |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45345260 |
ctctgagattattcaggattccttgagttctttcttgtggcaaagacagcacactgcttggtggcatccatgacttttcctgtctttctgtttgcaaata |
45345359 |
T |
|
| Q |
417 |
aagtgaactaatgaacatatgaactcagcgtagtcaacgaatagtacgatttccattcctctagtgaaggcacgaagatgtaacaaaaggaacacgagtc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45345360 |
aagtgaactaatgaacatatgaactcagcgtagtcaacgaatagtacgatttccattcctctagtgaaggcacgaagatgtaacaaaaggaacacgagtc |
45345459 |
T |
|
| Q |
517 |
atattggtgctacaagggcaatttaaatatctacctgcaccgctaataggtgtagttcggattgctgagatttgttgtgacggaggtccactgtccttgg |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45345460 |
atattggtgctacaagggcaatttaaatatctacctgcaccgctaataggtgtagttcggattgccgagatttgttgtgacggaggtccactgtccttgg |
45345559 |
T |
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| Q |
617 |
agaagacctatat |
629 |
Q |
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| T |
45345560 |
aaaagacctatat |
45345572 |
T |
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