View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14603_high_10 (Length: 227)
Name: NF14603_high_10
Description: NF14603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14603_high_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 4224047 - 4223823
Alignment:
| Q |
5 |
cataaacaacttccactttatttacaaattgattcttatgactagtttgattgtttgacgagtaaattaatcactcacaattcttcaaaagtacataaaa |
104 |
Q |
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| T |
4224047 |
cataaacaacttccagtttatttacaaattgattcttacgactagtttgattgtttgacgagtaaattaatcactcacaattcttcaaaagtacataaaa |
4223948 |
T |
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| Q |
105 |
caaacctatttttaataccaaaacttaacattattaaacgcacacagttttactttacttta--ttttctttttgaggcaaaacgtatgcacaatgttat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
4223947 |
caaacctatttttaataccaaaacttaacattattaaacgcacacagttttactttactttattttttctttttgtggcaaaacgtatgcacaatgttat |
4223848 |
T |
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| Q |
203 |
tgaaatgaaagtcaagatattaata |
227 |
Q |
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||||||||||||||||||||||||| |
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| T |
4223847 |
tgaaatgaaagtcaagatattaata |
4223823 |
T |
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