View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14603_high_13 (Length: 213)
Name: NF14603_high_13
Description: NF14603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14603_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 15153098 - 15153280
Alignment:
| Q |
12 |
cgaagaatatgatccacatagaagacatctagctacgcgagaatatcatggatgtgacgaaccatcaaataagagggacgtctaacattacacccgccat |
111 |
Q |
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| T |
15153098 |
cgaaaaatatgatccacatagaagacgtctagctacgcgagaatatcatggatgtgacgaaccatcaaataagagggacgtctaacattacacccgccaa |
15153197 |
T |
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| Q |
112 |
gaatcaaattcagtgcaacctttgaatcaaatttaatgtcaatatctctaaaacccaactttaaccccatgtaaatagtaatg |
194 |
Q |
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| T |
15153198 |
gaatcaaattcagtgcaacctttgaatcaaatttaatgtcaatatctctaaaactcaactttaaccccatgtaaatagtaatg |
15153280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 15148616 - 15148727
Alignment:
| Q |
50 |
gagaatatcatggatgtgacgaaccatcaaataagagggacgtctaacattacacccgccatgaatcaaattcagtgcaacctttgaatcaaatttaatg |
149 |
Q |
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| T |
15148616 |
gagaatatcaagggtttgacgaaccatcaaattagagggatatctcacattagacccatcaagaatcaaattcaatgcaaccatttaatcagattcaaca |
15148715 |
T |
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| Q |
150 |
tcaatatctcta |
161 |
Q |
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| T |
15148716 |
tcaatatctcta |
15148727 |
T |
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