View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14603_high_4 (Length: 415)

Name: NF14603_high_4
Description: NF14603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14603_high_4
NF14603_high_4
[»] chr4 (1 HSPs)
chr4 (19-398)||(40446370-40446749)
[»] chr5 (2 HSPs)
chr5 (255-303)||(34382545-34382593)
chr5 (255-305)||(22579676-22579726)
[»] chr6 (1 HSPs)
chr6 (253-304)||(2133323-2133374)
[»] chr1 (2 HSPs)
chr1 (308-377)||(37073723-37073790)
chr1 (255-305)||(45141369-45141419)
[»] chr7 (3 HSPs)
chr7 (255-304)||(27334375-27334424)
chr7 (349-377)||(4958339-4958367)
chr7 (267-326)||(48615335-48615397)
[»] chr2 (1 HSPs)
chr2 (309-377)||(4755304-4755370)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 398
Target Start/End: Complemental strand, 40446749 - 40446370
Alignment:
Q  19 tgaacttggttggaccagttcatgccttgaggaggagccgatcgatgcacattaatagccgcatattttattacacaatatggatgtagtaagaccatcc 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40446749 tgaacttggttggaccagttcataccttgaggaggagccgatcgatgcacattaatagccgcatactttattacacaatatggatgtagtaagaccatcc 40446650  T
Q  119 acaatagaagatcctaactccattaatatcgatatctaatagatattttcattgtgaagaaaagaagatggatacgtaaacagaagagcgtctcaaataa 218  Q
    || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40446649 acgatggaagatcctaactccattaatatcgatatctaatagatattttcattgtgaagaaaagaagatggatacgtaaacataagagcgtctcaaataa 40446550  T
Q  219 atatcatctctctttatgtgagtttcac---tattatagattaaaatattaaaatgtaatcctataaagctattgatagatgattaatgaatgtttaaga 315  Q
     |||||| ||    ||||||||||||||   | |||||||||||||||||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  40446549 gtatcatttc----tatgtgagtttcactctttttatagattaaaatattaaaatgtaattgtataaagttagtgatagatgattaatgaatgtttaaga 40446454  T
Q  316 aattcgtgtgaagtgttgagttgcataaaaatcgagtgtttattagatactactattaaaaattattaa-aagatatttgtacc 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40446453 aattcgtgtgaagtgttgagttgcataaaaatcgagtgtttattagatactactattaaaaattattaacaagatatttgtacc 40446370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 34382593 - 34382545
Alignment:
Q  255 attaaaatattaaaatgtaatcctataaagctattgatagatgattaat 303  Q
    |||||||||||||||||||||  ||||||  ||||||||||||||||||    
T  34382593 attaaaatattaaaatgtaatgatataaaattattgatagatgattaat 34382545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 22579676 - 22579726
Alignment:
Q  255 attaaaatattaaaatgtaatcctataaagctattgatagatgattaatga 305  Q
    ||||||| |||||||||||||  ||||||| ||||||||||| ||||||||    
T  22579676 attaaaaaattaaaatgtaattatataaagttattgatagataattaatga 22579726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 2133374 - 2133323
Alignment:
Q  253 agattaaaatattaaaatgtaatcctataaagctattgatagatgattaatg 304  Q
    |||||||||||||||||||||||  |||| || ||||||||||| |||||||    
T  2133374 agattaaaatattaaaatgtaatgatatagagttattgatagataattaatg 2133323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 377
Target Start/End: Original strand, 37073723 - 37073790
Alignment:
Q  308 gtttaagaaattcgtgtgaagtgttgagttgcataaaaatcgagtgtttattagatactactattaaaaa 377  Q
    |||||||| ||| |||||| |||||| |||||| |||  | ||||||||||||||||||| |||||||||    
T  37073723 gtttaagatatttgtgtgaggtgttgggttgcagaaa--ttgagtgtttattagatactagtattaaaaa 37073790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 45141419 - 45141369
Alignment:
Q  255 attaaaatattaaaatgtaatcctataaagctattgatagatgattaatga 305  Q
    |||||||||||||||||||||  | ||||| ||||||| ||||||||||||    
T  45141419 attaaaatattaaaatgtaattatgtaaagttattgattgatgattaatga 45141369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 27334375 - 27334424
Alignment:
Q  255 attaaaatattaaaatgtaatcctataaagctattgatagatgattaatg 304  Q
    ||||||||||| |||||||||  |||| || |||||||||||||||||||    
T  27334375 attaaaatattgaaatgtaatgatatagagttattgatagatgattaatg 27334424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 377
Target Start/End: Original strand, 4958339 - 4958367
Alignment:
Q  349 gagtgtttattagatactactattaaaaa 377  Q
    |||||||||||||||||||||||||||||    
T  4958339 gagtgtttattagatactactattaaaaa 4958367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 48615397 - 48615335
Alignment:
Q  267 aaatgtaatcctataaagctattgatagatgattaatgaat---gtttaagaaattcgtgtga 326  Q
    |||||||||  ||||||| ||||||||||||||||||| ||   |||||||||||| ||||||    
T  48615397 aaatgtaatgatataaagttattgatagatgattaatggattccgtttaagaaatttgtgtga 48615335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 4755370 - 4755304
Alignment:
Q  309 tttaagaaattcgtgtgaagtgttgagttgcataaaaatcgagtgtttattagatactactattaaaaa 377  Q
    ||||||||||| |||||| |||||||||||   |||||| |||| ||||||||||| || |||||||||    
T  4755370 tttaagaaatttgtgtgaggtgttgagttg--gaaaaattgagtatttattagataataatattaaaaa 4755304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University