View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14603_high_6 (Length: 377)
Name: NF14603_high_6
Description: NF14603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14603_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 40201142 - 40201413
Alignment:
| Q |
14 |
agatgaatttcaataaattgatttagatattaatatcataaataaacgctttcattaaaagataaaacacaaaacacccataacatcatgttgaatttca |
113 |
Q |
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| T |
40201142 |
agatgaatttcaataaattgatttacatattaatatcataaataaacgctttcattaaaagataaaacataaaacaaccataacatcatgttgaatttca |
40201241 |
T |
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| Q |
114 |
atgtgctattacatttttcaagtcacaatccacgggtttgagacttgagagccaagctctatatctttgtcattcaaaataaatgttgaatccatttgtt |
213 |
Q |
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| T |
40201242 |
atgtgctattacatttttcaagtcactatccacgggtttgagacttgagagccaagctctatatctttgtcattcaaaataaatgttgaatc-------- |
40201333 |
T |
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| Q |
214 |
tattttcttcattttgatagagatatgtaagttatagcacattgacaaatcgaacattttaacctcttatgcattttatccaccattag |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40201334 |
---------cattttgatagagatatgtaagttatagcacattgacaaatcgaccattttaacctcttatgcattttatccaccattag |
40201413 |
T |
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