View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14603_high_9 (Length: 227)
Name: NF14603_high_9
Description: NF14603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14603_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23345858 - 23345628
Alignment:
| Q |
1 |
tcttgattgacaagatccagaaaagaatctaacacatcgttgtatttcttagattgattagaagctcttgaatgtattctttcttccatcacttcatcnn |
100 |
Q |
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| T |
23345858 |
tcttgattgacaagatccagaaaagaatctaacacatcgttgtatttcttagattgattagaagctcttgaatgtattctttcttccatcacttcatcaa |
23345759 |
T |
|
| Q |
101 |
nnnnntcaagcaacttcc---------ttctcatcctttttcttacaccttgtggatcaaaatatttgaaaaaagtgaagaaatcaacaacattaggtct |
191 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23345758 |
aaaaatcaagcaacttcccaaagtaacttctcatcctttttcttacaccttgtggatcaaaatatttgaaaaaagtgaagaaatcaacaacattaggtct |
23345659 |
T |
|
| Q |
192 |
tccaacttcttccataataccaatcacaatt |
222 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23345658 |
tccaacttcttccataataccaatcacaatt |
23345628 |
T |
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