View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14603_low_10 (Length: 249)
Name: NF14603_low_10
Description: NF14603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14603_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 48824443 - 48824210
Alignment:
| Q |
18 |
ttcctttctaatacaactgccttatccttacttattaaccttctctatcgatttaatacatacgcacttgttaagttgttttccattcatagagtaaatg |
117 |
Q |
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| T |
48824443 |
ttcctttctaatacaactgacttatccttacttattaaccttctctatcgatttaatacatacgcacttgttaagttgttttccattcatagagtaaatg |
48824344 |
T |
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| Q |
118 |
tatgagaaagtaaaaagacatgatacaatcgttctctttgcatcatatattcttactcagagtctgcattga--annnnnnnnncaagtacatatttgtt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
48824343 |
tatgagaaagtaaaaagacatgatacaatcgttctctttgcatcatatattctcactcagagtctgcattgattttttttttttcaagtacatatttgtt |
48824244 |
T |
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| Q |
216 |
tgttcctttcattcagtgcaaaccacaaaaggtc |
249 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
48824243 |
tgttcctttcattcagtgcaaaccacaaaaggtc |
48824210 |
T |
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