View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14603_low_14 (Length: 226)
Name: NF14603_low_14
Description: NF14603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14603_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 34520762 - 34520666
Alignment:
| Q |
1 |
acatcacaatccaaggccatacaccaactccatctgatgctttaaaatccaagtatccagatagagtgtaccaaggcaatacaccactacatactat |
97 |
Q |
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| T |
34520762 |
acatcacaatccaaggccacacaccaactccatctgatgctttaaaatccaagtatcccgatagagtgtaccaaggcaatacaccactacatactat |
34520666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 27635073 - 27635007
Alignment:
| Q |
1 |
acatcacaatccaaggccatacaccaactccatctgatgctttaaaatccaagtatccagatagagt |
67 |
Q |
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| T |
27635073 |
acatcacaatccaaggccacacaccaactccatctgatgctttaaaatccaagtatctagatagagt |
27635007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 27635001 - 27634964
Alignment:
| Q |
188 |
gaagtgactgaaaataaattttaagctcgtgaaacaaa |
225 |
Q |
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| T |
27635001 |
gaagtgactgaaagtaaattttaagctcgtgaaacaaa |
27634964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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