View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14603_low_15 (Length: 214)

Name: NF14603_low_15
Description: NF14603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14603_low_15
NF14603_low_15
[»] chr8 (2 HSPs)
chr8 (97-198)||(32112780-32112881)
chr8 (1-51)||(32112878-32112928)
[»] chr7 (1 HSPs)
chr7 (106-144)||(46768050-46768088)
[»] chr3 (2 HSPs)
chr3 (107-150)||(12906564-12906607)
chr3 (106-144)||(54776859-54776897)
[»] chr4 (2 HSPs)
chr4 (110-144)||(5472735-5472769)
chr4 (106-144)||(13073033-13073071)
[»] chr2 (1 HSPs)
chr2 (106-144)||(30762920-30762958)
[»] chr6 (1 HSPs)
chr6 (108-144)||(32429564-32429600)
[»] chr5 (1 HSPs)
chr5 (108-144)||(12164598-12164634)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 32112881 - 32112780
Alignment:
Q  97 tttgtatcaggatttgaattctctccattgaaaattttctcaagtttttcccatatacttaaatcaaggacactttcgaacttgattgcgggtggtgagt 196  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32112881 tttgtatcaggatttgaattctctccatcgaaaattttctcaagtttttcccatatacttaaatcaaggacactttcgaacttgattgcgggtggtgagt 32112782  T
Q  197 tt 198  Q
    ||    
T  32112781 tt 32112780  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32112928 - 32112878
Alignment:
Q  1 tatatgtttgtatataaatatttcataacgataagatccacataaattttg 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32112928 tatatgtttgtatataaatatttcataacgataagatccacataaattttg 32112878  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 46768088 - 46768050
Alignment:
Q  106 ggatttgaattctctccattgaaaattttctcaagtttt 144  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  46768088 ggatttaaattctctccattgaaaattttctcaagtttt 46768050  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 12906564 - 12906607
Alignment:
Q  107 gatttgaattctctccattgaaaattttctcaagtttttcccat 150  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||    
T  12906564 gatttggattctctctattgaaaattttctcaagttttttccat 12906607  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 54776859 - 54776897
Alignment:
Q  106 ggatttgaattctctccattgaaaattttctcaagtttt 144  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  54776859 ggatttggattctctccattgaaatttttctcaagtttt 54776897  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 5472769 - 5472735
Alignment:
Q  110 ttgaattctctccattgaaaattttctcaagtttt 144  Q
    |||||| ||||||||||||||||||||||||||||    
T  5472769 ttgaatcctctccattgaaaattttctcaagtttt 5472735  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 13073033 - 13073071
Alignment:
Q  106 ggatttgaattctctccattgaaaattttctcaagtttt 144  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  13073033 ggatttggattctctccattgacaattttctcaagtttt 13073071  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 30762958 - 30762920
Alignment:
Q  106 ggatttgaattctctccattgaaaattttctcaagtttt 144  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  30762958 ggatttgaattctctccattgagaattttctcatgtttt 30762920  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 32429600 - 32429564
Alignment:
Q  108 atttgaattctctccattgaaaattttctcaagtttt 144  Q
    ||||| || ||||||||||||||||||||||||||||    
T  32429600 atttggatcctctccattgaaaattttctcaagtttt 32429564  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 12164634 - 12164598
Alignment:
Q  108 atttgaattctctccattgaaaattttctcaagtttt 144  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  12164634 atttggattctctccattgaaaattttctgaagtttt 12164598  T

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