View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14603_low_2 (Length: 633)
Name: NF14603_low_2
Description: NF14603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14603_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 17 - 617
Target Start/End: Complemental strand, 42223113 - 42222513
Alignment:
| Q |
17 |
gaatggaaaggaaaatggaaccatttcaagtcagagtaaggttcagaagaatagaattgatatgcccattgtaaaacatccagcggccacccaagggctt |
116 |
Q |
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| T |
42223113 |
gaatggaaaggaaaatggaaacatttcaagtcagagtaaggttcagaagaatagaattgatacgcccattgtaaaacatccaacggccacccaagggctt |
42223014 |
T |
|
| Q |
117 |
aaacgttcacctgcgcaataacatgtaaactaaagtagtcaataaatctcaaatagaggaaaagccaaactagaagaccacaatgcaactcccttcgcca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42223013 |
aaacgttcacctgcgcaataacatgtaaactaaagtagtcaataaatctcgaatagaggaaaagccaaactagaagaccacaatgcaactcccttcgcca |
42222914 |
T |
|
| Q |
217 |
aaa-gaagaccactccaaagtacgagcgaaagacaaagtcataaaaccaaactagaattttgctttctaattagagttacaaatgctagaatccacatgc |
315 |
Q |
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||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42222913 |
aaaagaagaccactccaaagtacgagcgaaagataaagtcataaaaccaaactagaattttgctttctaattagagttacaaaggctagaatccacatgc |
42222814 |
T |
|
| Q |
316 |
cacagtgtgactgagatacaagtctccaaacgaggagtcaatgaataataaaattaagcaaaccttttcattaagtgaacggattaatcacctgaacttt |
415 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42222813 |
cacagtgtgactgagatacaagtctcctaacgaggagtcaatgaataataaaattaagcaaaccttttcattaagtgaacggattaatcacctgaacttt |
42222714 |
T |
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| Q |
416 |
tgctcctacccaatacaagtaaaaactcagaaggaaaaacataaaagcacaatgaagttatataacaacgtggcatttagtannnnnnnaaaccagtgga |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42222713 |
tgctcctacccaatacaagtaaaaactcagaaggaaaaacataaaagcacaatgaagttatataacaacgtggcatttagta-ggggggaaaccagtgga |
42222615 |
T |
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| Q |
516 |
ggcaattaaatattaatagtctttaacggtttcggcttggttttctgtatttactgtattctccccaaaacaatttaatagtaatcatttgcaccatgtt |
615 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42222614 |
ggcaattaaatattaatagtctttaatggttttggcttggttttctgtatttactgtattctccccaaaacaatttaatagtaatcatttgcaccatgtt |
42222515 |
T |
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| Q |
616 |
tt |
617 |
Q |
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|| |
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| T |
42222514 |
tt |
42222513 |
T |
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