View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14603_low_3 (Length: 613)

Name: NF14603_low_3
Description: NF14603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14603_low_3
NF14603_low_3
[»] scaffold0084 (1 HSPs)
scaffold0084 (20-342)||(35993-36318)
[»] chr4 (10 HSPs)
chr4 (48-376)||(16360909-16361220)
chr4 (466-601)||(25985612-25985744)
chr4 (497-601)||(15566771-15566875)
chr4 (497-601)||(15579417-15579520)
chr4 (303-352)||(20841730-20841779)
chr4 (303-352)||(22704466-22704515)
chr4 (303-352)||(22713437-22713486)
chr4 (303-352)||(39535167-39535216)
chr4 (305-347)||(18036774-18036816)
chr4 (302-352)||(36696501-36696551)
[»] chr6 (15 HSPs)
chr6 (20-376)||(27510130-27510467)
chr6 (20-376)||(27518073-27518410)
chr6 (497-601)||(15665187-15665291)
chr6 (303-357)||(16815963-16816017)
chr6 (303-357)||(16824718-16824772)
chr6 (303-352)||(8276471-8276520)
chr6 (303-352)||(24142659-24142708)
chr6 (303-352)||(24149149-24149198)
chr6 (303-352)||(30436324-30436373)
chr6 (303-347)||(614964-615008)
chr6 (303-347)||(622885-622929)
chr6 (303-347)||(9130835-9130879)
chr6 (303-347)||(9144668-9144712)
chr6 (297-337)||(20050127-20050167)
chr6 (297-337)||(20057988-20058028)
[»] chr1 (6 HSPs)
chr1 (461-603)||(13186798-13186940)
chr1 (497-601)||(39455420-39455524)
chr1 (48-130)||(20520509-20520591)
chr1 (303-347)||(5637403-5637447)
chr1 (303-356)||(25925703-25925756)
chr1 (303-347)||(5623264-5623308)
[»] scaffold0422 (1 HSPs)
scaffold0422 (466-603)||(5384-5521)
[»] scaffold1271 (2 HSPs)
scaffold1271 (461-603)||(743-885)
scaffold1271 (48-130)||(1245-1327)
[»] scaffold0503 (2 HSPs)
scaffold0503 (466-598)||(790-920)
scaffold0503 (466-598)||(5357-5487)
[»] scaffold0458 (1 HSPs)
scaffold0458 (497-601)||(8193-8297)
[»] chr7 (3 HSPs)
chr7 (462-601)||(4892355-4892495)
chr7 (303-376)||(4892586-4892659)
chr7 (303-352)||(4848207-4848256)
[»] scaffold0014 (1 HSPs)
scaffold0014 (497-601)||(4811-4915)
[»] scaffold1575 (1 HSPs)
scaffold1575 (48-190)||(708-835)
[»] chr3 (11 HSPs)
chr3 (468-546)||(14253253-14253331)
chr3 (303-352)||(6194991-6195040)
chr3 (303-352)||(6202574-6202623)
chr3 (303-352)||(11628981-11629030)
chr3 (303-352)||(20603090-20603139)
chr3 (303-352)||(37255216-37255265)
chr3 (303-352)||(37265050-37265099)
chr3 (303-347)||(5945090-5945134)
chr3 (303-347)||(5959202-5959246)
chr3 (303-352)||(8616774-8616823)
chr3 (303-352)||(8624644-8624693)
[»] scaffold0068 (2 HSPs)
scaffold0068 (303-357)||(16893-16947)
scaffold0068 (303-357)||(24812-24866)
[»] scaffold0064 (1 HSPs)
scaffold0064 (303-357)||(8318-8372)
[»] chr5 (19 HSPs)
chr5 (303-357)||(21689044-21689098)
chr5 (303-357)||(21696963-21697017)
chr5 (303-352)||(1798448-1798497)
chr5 (303-352)||(1806190-1806239)
chr5 (303-352)||(5434810-5434859)
chr5 (303-352)||(5448630-5448679)
chr5 (303-352)||(15778759-15778808)
chr5 (303-352)||(15792994-15793043)
chr5 (303-352)||(17948940-17948989)
chr5 (303-352)||(17962830-17962879)
chr5 (303-347)||(7787333-7787377)
chr5 (303-347)||(7795183-7795227)
chr5 (303-347)||(11938747-11938791)
chr5 (303-347)||(12386447-12386491)
chr5 (303-347)||(12395140-12395184)
chr5 (303-347)||(34313377-34313421)
chr5 (284-353)||(37576663-37576732)
chr5 (284-353)||(37585775-37585844)
chr5 (303-347)||(11952671-11952715)
[»] scaffold1761 (1 HSPs)
scaffold1761 (65-120)||(803-858)
[»] scaffold0721 (1 HSPs)
scaffold0721 (303-352)||(2007-2056)
[»] scaffold0431 (1 HSPs)
scaffold0431 (303-352)||(1787-1836)
[»] chr8 (6 HSPs)
chr8 (303-352)||(18433898-18433947)
chr8 (303-352)||(23267064-23267113)
chr8 (303-352)||(39630578-39630627)
chr8 (303-352)||(39640125-39640174)
chr8 (304-353)||(15830814-15830863)
chr8 (303-347)||(12306791-12306835)
[»] scaffold0007 (1 HSPs)
scaffold0007 (284-353)||(62146-62215)
[»] chr2 (3 HSPs)
chr2 (303-352)||(12375512-12375561)
chr2 (303-352)||(12389339-12389388)
chr2 (284-333)||(19656649-19656698)
[»] scaffold0473 (1 HSPs)
scaffold0473 (307-376)||(8159-8227)
[»] scaffold0016 (1 HSPs)
scaffold0016 (284-333)||(57819-57868)


Alignment Details
Target: scaffold0084 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 36318 - 35993
Alignment:
20 gaaccacataatcggattcatacaccaacagaagcaaacagacgcgtcgaagccgagtcggaacgtaccggagcacaaggtagcaaccggagctcacacc 119  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||    
36318 gaaccactgaatcggattcatacaccaacagaagcaaacagacgcgtcgaagccgagtcggaacgtaccggagcacaaggcaacaaccggagctcactcc 36219  T
120 accgcaaacaaaaccgccgcaaatcaaccaatcgtgagcggacccaaagacaacgcaaaaggtag--tcttttttctaattccttagatctaggtttcaa 217  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||  |||||| |||||||||||||||||    
36218 accgcaaacaaaaccgccgcaaatcaaccgatcgtgagcggacccaaagacaacgcaaaaggtagtctctttttattaattctttagatctaggtttcaa 36119  T
218 tttaactgttttggaaattttgaggtcagaatcgagaagagggtgaaattttaggttagaaa-ccataaaagggagactcttttgtctccggcgcggcgg 316  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||    
36118 tttaactgttgtggaaatttcgaggtcagaatcgagaagagggtgaaattttaggttaaaaatccataaaggggagactcttttgtctccggcgcggcgg 36019  T
317 cgcagccgcgatggctcgccgtccac 342  Q
    ||||| ||||||||||||||| ||||    
36018 cgcagtcgcgatggctcgccggccac 35993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 48 - 376
Target Start/End: Original strand, 16360909 - 16361220
Alignment:
48 cagaagcaaacagacgcgtcgaagccgagtcggaacgtaccggagcacaaggtagcaaccggagctcacaccaccgcaaacaaaaccgccgcaaatcaac 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| || |||||||| |||| |||||||||||||||||||||    
16360909 cagaagcaaacagacgcgtcgaagccgagtcggaacgtaccggagcacaaggcagcgaccgaagttcacaccatcgcagacaaaaccgccgcaaatcaac 16361008  T
148 caatcgtgagcggacccaaagacaacgcaaaaggtagtcttttttctaattccttagatctaggtttcaatttaactgttttggaaattttgaggtcaga 247  Q
    |             |||||       |||||||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||| |||||||||||||    
16361009 cg------------cccaa-------gcaaaaggtagtctctttcctaatttcttagatctaggtttcaatttaactgttgtggaatttttgaggtcaga 16361089  T
248 atcgagaagagggtgaaattttaggttagaaacc---ataaaagggagactcttttgtctccggcgcggcggcgcagccgcgatggctcgccgtccactg 344  Q
     | |||||||||||||||||| ||| |||||| |   | |||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||| |    
16361090 tttgagaagagggtgaaattt-agggtagaaatccaaaaaaaaaggagacccttttgtctccggcgcggcggcgcagccgcgatggctcgtcggccaccg 16361188  T
345 cgcaggaactccttccaccacccattctccaa 376  Q
    ||| |||||||| |||||||||||||||||||    
16361189 cgccggaactccctccaccacccattctccaa 16361220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 466 - 601
Target Start/End: Original strand, 25985612 - 25985744
Alignment:
466 ggtcttacaccctatatatatgtccccttcgaaccggttcggttctatggaaccgacccaggatttgaaccgaaccggccccagcctgtcgtctaagccc 565  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||| ||    
25985612 ggtcttacaccctatatatat--ccccttcgaaccggttcggttctctggaaccgacccagggtttgaaccgaaccggccccagcctgtcctctaagtcc 25985709  T
566 atttccgaatttgttcttcggcccaactctctgctg 601  Q
    | ||||||| ||||||||||| ||||||||||||||    
25985710 aattccgaaattgttcttcgg-ccaactctctgctg 25985744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 497 - 601
Target Start/End: Complemental strand, 15566875 - 15566771
Alignment:
497 aaccggttcggttctatggaaccgacccaggatttgaaccgaaccggccccagcctgtcgtctaagcccatttccgaatttgttcttcggcccaactctc 596  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| |||| | ||| |||||||  ||||||||||||||||||||    
15566875 aaccggttcggttctctggaaccgacccaggacttgaaccgaaccggccccagtctgtcctctaggtccaattccgaaactgttcttcggcccaactctc 15566776  T
597 tgctg 601  Q
    |||||    
15566775 tgctg 15566771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 497 - 601
Target Start/End: Complemental strand, 15579520 - 15579417
Alignment:
497 aaccggttcggttctatggaaccgacccaggatttgaaccgaaccggccccagcctgtcgtctaagcccatttccgaatttgttcttcggcccaactctc 596  Q
    |||| |||||||||| |||||||||||||||| |||||||||||||| ||||| ||||| |||| | ||| |||||||  ||||||||||||||||||||    
15579520 aaccagttcggttctctggaaccgacccaggacttgaaccgaaccgg-cccagtctgtcctctaggtccaattccgaaactgttcttcggcccaactctc 15579422  T
597 tgctg 601  Q
    |||||    
15579421 tgctg 15579417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 20841779 - 20841730
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
20841779 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 20841730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 22704466 - 22704515
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
22704466 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 22704515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 22713437 - 22713486
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
22713437 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 22713486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 39535167 - 39535216
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
39535167 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 39535216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 18036774 - 18036816
Alignment:
305 ccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
18036774 ccggcgcggcggcgcagccgcgatggctcgccggccaccgcgc 18036816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 36696551 - 36696501
Alignment:
302 tctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||| |||||||||||| ||| |||| |||| ||||    
36696551 tctccggcgcggcggcgcaaccgcgatggctcaccgaccaccgcgccggaa 36696501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 5e-67; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 27510130 - 27510467
Alignment:
20 gaaccacataatcggattcatacaccaacagaagcaaacagacgcgtcgaagccgagtcggaacgtaccggagcacaaggtagcaaccggagctcacacc 119  Q
    |||||||  |||||| ||||||||||||||||||||||| |||| |||| | |||||||||||||||||| ||||||||||||| ||||||| |||||||    
27510130 gaaccactgaatcgggttcatacaccaacagaagcaaacggacgtgtcggaaccgagtcggaacgtaccgaagcacaaggtagcgaccggagttcacacc 27510229  T
120 accgcaaacaaaaccgccgcaaatcaaccaatcgtgagcggacccaaagacaacgcaaaaggtagtcttttttctaattccttagatctaggtttcaatt 219  Q
    |||||| ||||||||| ||||||||||||           | | ||||       ||||||||||||| |||||||| | ||||||||||| ||||||||    
27510230 accgcagacaaaaccgtcgcaaatcaacc-----------gccgcaaa-------caaaaggtagtctcttttctaacttcttagatctag-tttcaatt 27510310  T
220 taactgttttggaaattttgaggtcagaatcgagaagagggtgaaattttaggttagaaa-ccataaaagggagactcttttgtctccggcgcggcggcg 318  Q
    || ||||| ||||| ||||||||| ||| | |||||||||||||||||| |||||||||| ||| ||||   |||| ||||||||||| |||||||||||    
27510311 tagctgttgtggaatttttgaggtaagatttgagaagagggtgaaattt-aggttagaaatccaaaaaaaaaagacccttttgtctccagcgcggcggcg 27510409  T
319 cagccgcgatggctcgccgtccactgcgcaggaactccttccaccacccattctccaa 376  Q
    |||||||| ||||||| || |||| |||| |||||||| |||||||||||||||||||    
27510410 cagccgcgttggctcgtcggccaccgcgccggaactccctccaccacccattctccaa 27510467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 27518073 - 27518410
Alignment:
20 gaaccacataatcggattcatacaccaacagaagcaaacagacgcgtcgaagccgagtcggaacgtaccggagcacaaggtagcaaccggagctcacacc 119  Q
    |||||||  |||||| ||||||||||||||||||||||| |||| |||| | |||||||||||||||||| ||||||||||||| ||||||| |||||||    
27518073 gaaccactgaatcgggttcatacaccaacagaagcaaacggacgtgtcggaaccgagtcggaacgtaccgaagcacaaggtagcgaccggagttcacacc 27518172  T
120 accgcaaacaaaaccgccgcaaatcaaccaatcgtgagcggacccaaagacaacgcaaaaggtagtcttttttctaattccttagatctaggtttcaatt 219  Q
    |||||| ||||||||| ||||||||||||           | | ||||       ||||||||||||| |||||||| | ||||||||||| ||||||||    
27518173 accgcagacaaaaccgtcgcaaatcaacc-----------gccgcaaa-------caaaaggtagtctcttttctaacttcttagatctag-tttcaatt 27518253  T
220 taactgttttggaaattttgaggtcagaatcgagaagagggtgaaattttaggttagaaa-ccataaaagggagactcttttgtctccggcgcggcggcg 318  Q
    || ||||| ||||| ||||||||| ||| | |||||||||||||||||| |||||||||| ||| ||||   |||| ||||||||||| |||||||||||    
27518254 tagctgttgtggaatttttgaggtaagatttgagaagagggtgaaattt-aggttagaaatccaaaaaaaaaagacccttttgtctccagcgcggcggcg 27518352  T
319 cagccgcgatggctcgccgtccactgcgcaggaactccttccaccacccattctccaa 376  Q
    |||||||| ||||||| || |||| |||| |||||||| |||||||||||||||||||    
27518353 cagccgcgttggctcgtcggccaccgcgccggaactccctccaccacccattctccaa 27518410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 497 - 601
Target Start/End: Complemental strand, 15665291 - 15665187
Alignment:
497 aaccggttcggttctatggaaccgacccaggatttgaaccgaaccggccccagcctgtcgtctaagcccatttccgaatttgttcttcggcccaactctc 596  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| | ||| ||| |||  |||||||||||||||||||     
15665291 aaccggttcggttctttggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaggtccaattctgaaactgttcttcggcccaactctt 15665192  T
597 tgctg 601  Q
    |||||    
15665191 tgctg 15665187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 16816017 - 16815963
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaactcct 357  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
16816017 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaactcct 16815963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 16824772 - 16824718
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaactcct 357  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
16824772 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaactcct 16824718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 8276471 - 8276520
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
8276471 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 8276520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 24142708 - 24142659
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
24142708 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 24142659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 24149198 - 24149149
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
24149198 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 24149149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 30436373 - 30436324
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
30436373 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 30436324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 615008 - 614964
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
615008 ctccggcgcggcggcgcagccgcgatggctcgccgaccaccgcgc 614964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 622929 - 622885
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
622929 ctccggcgcggcggcgcagccgcgatggctcgccgaccaccgcgc 622885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 9130879 - 9130835
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
9130879 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgc 9130835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 9144712 - 9144668
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
9144712 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgc 9144668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 20050167 - 20050127
Alignment:
297 ttttgtctccggcgcggcggcgcagccgcgatggctcgccg 337  Q
    ||||||||||| |||||||||||||||||||||||||||||    
20050167 ttttgtctccgacgcggcggcgcagccgcgatggctcgccg 20050127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 20058028 - 20057988
Alignment:
297 ttttgtctccggcgcggcggcgcagccgcgatggctcgccg 337  Q
    ||||||||||| |||||||||||||||||||||||||||||    
20058028 ttttgtctccgacgcggcggcgcagccgcgatggctcgccg 20057988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 4e-58; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 461 - 603
Target Start/End: Original strand, 13186798 - 13186940
Alignment:
461 aaaaaggtcttacaccctatatatatgtccccttcgaaccggttcggttctatggaaccgacccaggatttgaaccgaaccggccccagcctgtcgtcta 560  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||    
13186798 aaaagggtcttacaccctatatatatgtcccctccgaaccggttcggatctctgaaaccgacccaggatttgaaccgaaccggccccagcctgtcctcta 13186897  T
561 agcccatttccgaatttgttcttcggcccaactctctgctgct 603  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
13186898 agcccaattccgaatttgttcttcggcccaactctctgctgct 13186940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 497 - 601
Target Start/End: Original strand, 39455420 - 39455524
Alignment:
497 aaccggttcggttctatggaaccgacccaggatttgaaccgaaccggccccagcctgtcgtctaagcccatttccgaatttgttcttcggcccaactctc 596  Q
    ||||||||||||||| |||||| |||||||| ||||||| ||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||    
39455420 aaccggttcggttctctggaactgacccagggtttgaactgaaccggccccagcctgtcctctaagtccaattccgaaattgttcttcggcccaactctc 39455519  T
597 tgctg 601  Q
    |||||    
39455520 tgctg 39455524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 20520591 - 20520509
Alignment:
48 cagaagcaaacagacgcgtcgaagccgagtcggaacgtaccggagcacaaggtagcaaccggagctcacaccaccgcaaacaa 130  Q
    ||||||||||| ||||||||||| |||| |||||||||||||||||| || | |||||||  || ||| ||||| ||||||||    
20520591 cagaagcaaacggacgcgtcgaatccgaatcggaacgtaccggagcataaagcagcaaccaaagttcataccacggcaaacaa 20520509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 5637447 - 5637403
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
5637447 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgc 5637403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 25925756 - 25925703
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaactcc 356  Q
    |||||||||||||| ||||||||||| |||||||| |||| |||| ||||||||    
25925756 ctccggcgcggcggagcagccgcgattgctcgccggccaccgcgccggaactcc 25925703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 5623308 - 5623264
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    |||||||||||||||||||||||||||| |||||| |||| ||||    
5623308 ctccggcgcggcggcgcagccgcgatggttcgccggccaccgcgc 5623264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0422 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 466 - 603
Target Start/End: Complemental strand, 5521 - 5384
Alignment:
466 ggtcttacaccctatatatatgtccccttcgaaccggttcggttctatggaaccgacccaggatttgaaccgaaccggccccagcctgtcgtctaagccc 565  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| |||||||||||||| |||||| ||    
5521 ggtcttacaccctatatatatgtccccttcgaaccggttcggtactctggaaccgacccaggacttgaaccgaactggccccagcctgtcctctaagtcc 5422  T
566 atttccgaatttgttcttcggcccaactctctgctgct 603  Q
    | ||||||| ||||||||||||||||||||||||||||    
5421 aattccgaaattgttcttcggcccaactctctgctgct 5384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1271 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: scaffold1271
Description:

Target: scaffold1271; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 461 - 603
Target Start/End: Complemental strand, 885 - 743
Alignment:
461 aaaaaggtcttacaccctatatatatgtccccttcgaaccggttcggttctatggaaccgacccaggatttgaaccgaaccggccccagcctgtcgtcta 560  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| || ||||    
885 aaaagggtcttacaccctatatatatgtccccttcgaaccggttcggttctctggaaccgacccagaatttgaaccgaaccgaccccagcctttcctcta 786  T
561 agcccatttccgaatttgttcttcggcccaactctctgctgct 603  Q
    ||||||   ||||||||| |||||||| || |||||| |||||    
785 agcccaacaccgaatttgctcttcggctcagctctctactgct 743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1271; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 1327 - 1245
Alignment:
48 cagaagcaaacagacgcgtcgaagccgagtcggaacgtaccggagcacaaggtagcaaccggagctcacaccaccgcaaacaa 130  Q
    ||||||||||  ||||||||||| |||||||||||||||||||||||||| | |||||||| || ||||||||| ||||||||    
1327 cagaagcaaaaggacgcgtcgaatccgagtcggaacgtaccggagcacaaagcagcaaccgaagttcacaccacggcaaacaa 1245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 466 - 598
Target Start/End: Complemental strand, 920 - 790
Alignment:
466 ggtcttacaccctatatatatgtccccttcgaaccggttcggttctatggaaccgacccaggatttgaaccgaaccggccccagcctgtcgtctaagccc 565  Q
    |||||||||||||||||||||  ||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||| |||||  ||    
920 ggtcttacaccctatatatat--cccctacgaaccggttcggttctctggaaccgacctaggacttgaaccgaaccggccctagcctgtcctctaactcc 823  T
566 atttccgaatttgttcttcggcccaactctctg 598  Q
    | ||||||| |||||||||||||||||||||||    
822 aattccgaaattgttcttcggcccaactctctg 790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 466 - 598
Target Start/End: Complemental strand, 5487 - 5357
Alignment:
466 ggtcttacaccctatatatatgtccccttcgaaccggttcggttctatggaaccgacccaggatttgaaccgaaccggccccagcctgtcgtctaagccc 565  Q
    |||||||||||||||||||||  ||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||| |||||  ||    
5487 ggtcttacaccctatatatat--cccctacgaaccggttcggttctctggaaccgacctaggacttgaaccgaaccggccctagcctgtcctctaactcc 5390  T
566 atttccgaatttgttcttcggcccaactctctg 598  Q
    | ||||||| |||||||||||||||||||||||    
5389 aattccgaaattgttcttcggcccaactctctg 5357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 497 - 601
Target Start/End: Complemental strand, 8297 - 8193
Alignment:
497 aaccggttcggttctatggaaccgacccaggatttgaaccgaaccggccccagcctgtcgtctaagcccatttccgaatttgttcttcggcccaactctc 596  Q
    ||||||||||||||| |||||| |||||||| ||||||| ||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||    
8297 aaccggttcggttctctggaactgacccagggtttgaactgaaccggccccagcctgtcctctaagtccaattccgaaattgttcttcggcccaactctc 8198  T
597 tgctg 601  Q
    |||||    
8197 tgctg 8193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 462 - 601
Target Start/End: Complemental strand, 4892495 - 4892355
Alignment:
462 aaaaggtcttacaccctatatatatgtccccttcgaaccggttcggttcta-tggaaccgacccaggatttgaaccgaaccggccccagcctgtcgtcta 560  Q
    |||| |||||||||||||||||||||||||||| ||||||||| |||| |  | ||||||||| |||| ||||||| | | ||||||| |||||| ||||    
4892495 aaaaagtcttacaccctatatatatgtcccctttgaaccggtttggttttcctagaaccgaccaaggacttgaaccaatctggccccaacctgtcctcta 4892396  T
561 agcccatttccgaatttgttcttcggcccaactctctgctg 601  Q
    || ||| ||||||| ||||||||||||||||||||||||||    
4892395 agtccaattccgaaattgttcttcggcccaactctctgctg 4892355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 303 - 376
Target Start/End: Complemental strand, 4892659 - 4892586
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaactccttccaccacccattctccaa 376  Q
    |||||||||||||||| |||||||||||||||||| |||| |||| |||||||  |||||||||||||||||||    
4892659 ctccggcgcggcggcgaagccgcgatggctcgccggccaccgcgctggaactcactccaccacccattctccaa 4892586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 4848207 - 4848256
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
4848207 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 4848256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 497 - 601
Target Start/End: Original strand, 4811 - 4915
Alignment:
497 aaccggttcggttctatggaaccgacccaggatttgaaccgaaccggccccagcctgtcgtctaagcccatttccgaatttgttcttcggcccaactctc 596  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| | ||| ||| |||  |||||||||||||||||||     
4811 aaccggttcggttctttggaaccgacccaggacttgaaccgaaccggccccagcctgtcctctaggtccaattctgaaactgttcttcggcccaactctt 4910  T
597 tgctg 601  Q
    |||||    
4911 tgctg 4915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1575 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold1575
Description:

Target: scaffold1575; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 48 - 190
Target Start/End: Original strand, 708 - 835
Alignment:
48 cagaagcaaacagacgcgtcgaagccgagtcggaacgtaccggagcacaaggtagcaaccggagctcacaccaccgcaaacaaaaccgccgcaaatcaac 147  Q
    ||||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||| |||| || ||||||||               ||||||||||||    
708 cagaagcaaacggacgcgtcgaatccgagtcggaacggaccggagcacaaggcagcgaccgaagttcacacca---------------ccgcaaatcaac 792  T
148 caatcgtgagcggacccaaagacaacgcaaaaggtagtctttt 190  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
793 caatcgtgagcggacccaaagacaacgcaaaaggtagtatttt 835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 468 - 546
Target Start/End: Original strand, 14253253 - 14253331
Alignment:
468 tcttacaccctatatatatgtccccttcgaaccggttcggttctatggaaccgacccaggatttgaaccgaaccggccc 546  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||| ||||| ||||||||||||||    
14253253 tcttacaccctatatatatgtcccctccgaactggttcggttctttggaatcgacccatgatttaaaccgaaccggccc 14253331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 6194991 - 6195040
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
6194991 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 6195040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 6202574 - 6202623
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
6202574 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 6202623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 11629030 - 11628981
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
11629030 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 11628981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 20603139 - 20603090
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
20603139 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 20603090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 37255265 - 37255216
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
37255265 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 37255216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 37265099 - 37265050
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
37265099 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 37265050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 5945134 - 5945090
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
5945134 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgc 5945090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 5959246 - 5959202
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
5959246 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgc 5959202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 8616774 - 8616823
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||| ||||||||||||||||||||||||||| |||| |||| ||||    
8616774 ctccggcacggcggcgcagccgcgatggctcgccggccaccgcgccggaa 8616823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 8624644 - 8624693
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||| ||||||||||||||||||||||||||| |||| |||| ||||    
8624644 ctccggcacggcggcgcagccgcgatggctcgccggccaccgcgctggaa 8624693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 16947 - 16893
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaactcct 357  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
16947 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaactcct 16893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 24866 - 24812
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaactcct 357  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
24866 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaactcct 24812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 8372 - 8318
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaactcct 357  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
8372 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaactcct 8318  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 21689044 - 21689098
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaactcct 357  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
21689044 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaactcct 21689098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 21696963 - 21697017
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaactcct 357  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
21696963 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaactcct 21697017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 1798448 - 1798497
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
1798448 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 1798497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 1806190 - 1806239
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
1806190 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 1806239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 5434859 - 5434810
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
5434859 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 5434810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 5448679 - 5448630
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
5448679 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 5448630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 15778808 - 15778759
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
15778808 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 15778759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 15793043 - 15792994
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
15793043 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 15792994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 17948940 - 17948989
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
17948940 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 17948989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 17962830 - 17962879
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
17962830 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 17962879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 7787333 - 7787377
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
7787333 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgc 7787377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 7795183 - 7795227
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
7795183 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgc 7795227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 11938791 - 11938747
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
11938791 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgc 11938747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 12386491 - 12386447
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
12386491 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgc 12386447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 12395184 - 12395140
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
12395184 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgc 12395140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 34313421 - 34313377
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
34313421 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgc 34313377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 37576663 - 37576732
Alignment:
284 aaaagggagactcttttgtctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaac 353  Q
    |||| |||||| ||||  |||||||||||||||||||||||| ||||||| ||| |||| |||| |||||    
37576663 aaaaaggagacgctttcatctccggcgcggcggcgcagccgctatggctcaccggccaccgcgccggaac 37576732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 37585775 - 37585844
Alignment:
284 aaaagggagactcttttgtctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaac 353  Q
    |||| |||||| ||||  |||||||||||||||||||||||| ||||||| ||| |||| |||| |||||    
37585775 aaaaaggagacgctttcatctccggcgcggcggcgcagccgctatggctcaccggccaccgcgccggaac 37585844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 11952715 - 11952671
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    |||||||||||||||||||||||||||||| |||| |||| ||||    
11952715 ctccggcgcggcggcgcagccgcgatggcttgccggccaccgcgc 11952671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1761 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1761
Description:

Target: scaffold1761; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 858 - 803
Alignment:
65 gtcgaagccgagtcggaacgtaccggagcacaaggtagcaaccggagctcacacca 120  Q
    |||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||||    
858 gtcgaagctgagacggaacgtaccggagcacaaggtagcgaccggagttcacacca 803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0721 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0721
Description:

Target: scaffold0721; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 2056 - 2007
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
2056 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 2007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 1836 - 1787
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
1836 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 1787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 18433898 - 18433947
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
18433898 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 18433947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 23267113 - 23267064
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
23267113 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 23267064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 39630627 - 39630578
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
39630627 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 39630578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 39640174 - 39640125
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||    
39640174 ctccggcgcggcggcgcagccgcgatggctcgccggccaccgcgccggaa 39640125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 15830814 - 15830863
Alignment:
304 tccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaac 353  Q
    |||||||||||||||||||||||||||||| ||| |||| |||| |||||    
15830814 tccggcgcggcggcgcagccgcgatggctcaccgaccaccgcgccggaac 15830863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 12306835 - 12306791
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgc 347  Q
    ||||||||||||||||||||||| ||||||||||| |||| ||||    
12306835 ctccggcgcggcggcgcagccgctatggctcgccggccaccgcgc 12306791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 62146 - 62215
Alignment:
284 aaaagggagactcttttgtctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaac 353  Q
    ||||||||||  ||||  ||||||||||||||||||||||| |||||||| ||| |||| |||| |||||    
62146 aaaagggagaaactttcatctccggcgcggcggcgcagccgtgatggctcaccggccaccgcgccggaac 62215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 12375512 - 12375561
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||| ||||||||||||||||||||||||||| |||| |||| ||||    
12375512 ctccggcacggcggcgcagccgcgatggctcgccggccaccgcgccggaa 12375561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 12389339 - 12389388
Alignment:
303 ctccggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaa 352  Q
    ||||||| ||||||||||||||||||||||||||| |||| |||| ||||    
12389339 ctccggcacggcggcgcagccgcgatggctcgccggccaccgcgccggaa 12389388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 19656698 - 19656649
Alignment:
284 aaaagggagactcttttgtctccggcgcggcggcgcagccgcgatggctc 333  Q
    |||| |||||| ||||  ||||||||||||||||||||||||||||||||    
19656698 aaaaaggagacactttcatctccggcgcggcggcgcagccgcgatggctc 19656649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0473 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0473
Description:

Target: scaffold0473; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 8227 - 8159
Alignment:
307 ggcgcggcggcgcagccgcgatggctcgccgtccactgcgcaggaactccttccaccacccattctccaa 376  Q
    |||||||||||||||||||||||||||| || |||| || | ||||  || ||| |||||||||||||||    
8227 ggcgcggcggcgcagccgcgatggctcgacggccaccgcaccggaa-accctccgccacccattctccaa 8159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 57868 - 57819
Alignment:
284 aaaagggagactcttttgtctccggcgcggcggcgcagccgcgatggctc 333  Q
    ||||| ||||| ||||  |||||||||||||||||||||||| |||||||    
57868 aaaagagagacactttcatctccggcgcggcggcgcagccgcaatggctc 57819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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