View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14603_low_4 (Length: 457)
Name: NF14603_low_4
Description: NF14603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14603_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Original strand, 41510997 - 41511420
Alignment:
| Q |
16 |
atgaaatcatatggtgtaatcataaacagttttgaggagttagagaaagaatatgttaatgattacaaaaaggtaagaaatgataaggtttggtgtgttg |
115 |
Q |
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| T |
41510997 |
atgaaatcatatggtgtaatcataaacagttttgaggagttagagaaagaatatgttaatgattacaaaaaggtaagaaatgataaggtttggtgtgttg |
41511096 |
T |
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| Q |
116 |
gtcctgttgcactttgcaacaaagatggtttagataaggctcaaagaggtaacatagcttcaataagtgaacataattgtttaaactttctagatttgca |
215 |
Q |
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| T |
41511097 |
gtcctgttgcactttgcaacaaagatggtttagataaggctcaaagaggtaacatagcttcaataagtgaacataattgtttaaactttctagatttgca |
41511196 |
T |
|
| Q |
216 |
taaaccaaaatctgttgtttatgtttgtcttggaagtttatgcaatttaattccttcacaacttattgaattggctttgggattagaagcaacaaaaatt |
315 |
Q |
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| T |
41511197 |
taaaccaaaatctgttgtttatgtttgtcttggaagtttatgcaatttaattccttcacaacttattgaattggctttgggattagaagcaacaaaaatt |
41511296 |
T |
|
| Q |
316 |
ccatttatttgggttattagggaaggaatttataaaagtgaagagttggaaaaatggattagtgatggaaagtttgaggaaaggaataacgggagaggac |
415 |
Q |
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| T |
41511297 |
ccatttatttgggttattagggaaggaatttataaaagtgaagagttggaaaaatggattagtgatgaaaagtttgaggaaaggaataaagggagaggac |
41511396 |
T |
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| Q |
416 |
ttataattagagggtgggccccac |
439 |
Q |
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| T |
41511397 |
ttataattagagggtgggccccac |
41511420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 16 - 380
Target Start/End: Original strand, 48532351 - 48532715
Alignment:
| Q |
16 |
atgaaatcatatggtgtaatcataaacagttttgaggagttagagaaagaatatgttaatgattacaaaaaggtaagaaatgataaggtttggtgtgttg |
115 |
Q |
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| T |
48532351 |
atgaagtcatatggtgaaatcataaacacttttgaggagttggagaaagcatatgttaaggattacaagaaggaaaaaaatggcaaggtatggtttgttg |
48532450 |
T |
|
| Q |
116 |
gtcctgttgcactttgcaacaaagatggtttagataaggctcaaagaggtaacatagcttcaataagtgaacataattgtttaaactttctagatttgca |
215 |
Q |
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| T |
48532451 |
gaccagtttcactttgcaacaaagatggtttggataaggcacaaagaggtattatagcctcaataagtgaacatcattgcttaaagtggctagatttgca |
48532550 |
T |
|
| Q |
216 |
taaaccaaaatctgttgtttatgtttgtcttggaagtttatgcaatttaattccttcacaacttattgaattggctttgggattagaagcaacaaaaatt |
315 |
Q |
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| T |
48532551 |
ccaaccaaagtctgtggtgtatgcttgtcttggaagtttatgcaacttaattccttcacagcttatggaattggctttggcattggaagcgacaaatagg |
48532650 |
T |
|
| Q |
316 |
ccatttatttgggttattagggaaggaatttataaaagtgaagagttggaaaaatggattagtga |
380 |
Q |
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| T |
48532651 |
ccatttatttgggttattagggaaggaaataaaagtagcgaagagttggaaaaatggattagtga |
48532715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 41536721 - 41536812
Alignment:
| Q |
76 |
gattacaaaaaggtaagaaatgataaggtttggtgtgttggtcctgttgcactttgcaacaaagatggtttagataaggctcaaagaggtaa |
167 |
Q |
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| T |
41536721 |
gattataaaaaggtaagaaatgataaagtttggtgtattggtcctgtatcacttagtaacactgattacttggataaggttcaaagaggtaa |
41536812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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