View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14603_low_6 (Length: 387)
Name: NF14603_low_6
Description: NF14603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14603_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 3 - 371
Target Start/End: Complemental strand, 31169920 - 31169552
Alignment:
| Q |
3 |
gagatgaagtccggtctttgtgcacgtatgcatgggtcggtataatctagttttagggagaaatcnnnnnnntatgaaccaatcaaaagtagttagttta |
102 |
Q |
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| T |
31169920 |
gagatgaagtccggtctttgtgcatgtatgtatgggtcggtataatctagttttagggagaaatcaaaaaaatatgaaccaatcaaaagtagttagttta |
31169821 |
T |
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| Q |
103 |
gtttgatttttccaatatattttttaaaaaatgttgacaagtaaatggatcaagtcttgggcgatgcattttaaatactcgaaccatattatgtttgact |
202 |
Q |
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| T |
31169820 |
gtttgatttttccaatatattttttaaaaaatgttgacaagtaaatggatcaagtcttgggcgatgcattttaaatactcgaaccatattatgtttgact |
31169721 |
T |
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| Q |
203 |
tttatattttccaaacacatttatgtacacgactaagatattttttggcctaccaacaaataagatagttttttattaaactttctaaacaaaaaatcac |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |
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| T |
31169720 |
tttatattttccaaacacatttatgtacacgactaagatattttttggcctaccaacaaataagatatttttttatcaaattttctaaacaaaaaatcac |
31169621 |
T |
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| Q |
303 |
atatattaaatttgttttagacttcacttactattaaaaattatttgtccaaacccgtttatacatttg |
371 |
Q |
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| T |
31169620 |
atatattaaatttgttttagacttcacttactattaaaaattatttgtccaaacccgtttatacatttg |
31169552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 347
Target Start/End: Original strand, 41928691 - 41928738
Alignment:
| Q |
300 |
cacatatattaaatttgttttagacttcacttactattaaaaattatt |
347 |
Q |
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| T |
41928691 |
cacatatattaaacttgttttagccctcacttactattgaaaattatt |
41928738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 349
Target Start/End: Complemental strand, 39753121 - 39753089
Alignment:
| Q |
317 |
ttttagacttcacttactattaaaaattatttg |
349 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
39753121 |
ttttagccttcacttactattaaaaattatttg |
39753089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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