View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14603_low_8 (Length: 376)

Name: NF14603_low_8
Description: NF14603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14603_low_8
NF14603_low_8
[»] chr4 (1 HSPs)
chr4 (6-361)||(17248336-17248692)
[»] chr5 (17 HSPs)
chr5 (7-312)||(31187569-31187874)
chr5 (7-312)||(31225904-31226209)
chr5 (8-262)||(41333000-41333254)
chr5 (8-251)||(41311231-41311474)
chr5 (8-251)||(41325090-41325333)
chr5 (7-312)||(31177506-31177811)
chr5 (8-251)||(41317026-41317269)
chr5 (12-313)||(41287196-41287497)
chr5 (9-279)||(41367180-41367450)
chr5 (11-263)||(41305341-41305593)
chr5 (8-251)||(41329067-41329310)
chr5 (11-244)||(41337810-41338043)
chr5 (84-250)||(41369940-41370106)
chr5 (120-220)||(41329492-41329592)
chr5 (158-232)||(41311681-41311755)
chr5 (158-231)||(41333403-41333476)
chr5 (109-165)||(41342496-41342552)
[»] chr3 (3 HSPs)
chr3 (39-131)||(22971932-22972024)
chr3 (39-130)||(22946386-22946477)
chr3 (39-130)||(22986259-22986350)
[»] chr8 (1 HSPs)
chr8 (39-130)||(23610199-23610290)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 361
Target Start/End: Complemental strand, 17248692 - 17248336
Alignment:
Q  6 caaaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||| |||||||||||||||||||    
T  17248692 caaaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagcccaattgatttcaaaggcatgaatttcgaatacataccatttggtg 17248593  T
Q  106 ctggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatga 205  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17248592 ctggaaggaggatttgtccgggcattgcatttggcatacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatga 17248493  T
Q  206 aatgaagaatgaagatctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttgagtccaactacacgtcgcccttaatat 305  Q
    |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  17248492 aatgaagaatgaagatctagatatgaccgagtcatttgggattacaataagaagaaaaaatgacctgtgcttgattccagctacacgtcgcccttaatat 17248393  T
Q  306 atgtattggctatg-nnnnnnnncttcacaatgagtttaatttccttcaactatttt 361  Q
    ||||||||||||||         ||||||||||||||||||||||||||||||||||    
T  17248392 atgtattggctatgcaaaaaaaacttcacaatgagtttaatttccttcaactatttt 17248336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 312
Target Start/End: Complemental strand, 31187874 - 31187569
Alignment:
Q  7 aaaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgc 106  Q
    ||||||||||||  |||||||||||||| |||||||| |||||| | |||||| || |||||||| ||||||| ||||||||||||||||| || |||||    
T  31187874 aaaggtattgggcagaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaattttgaatacataccgttcggtgc 31187775  T
Q  107 tggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaa 206  Q
    |||||| || || ||||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |||| |    
T  31187774 tggaagaagaatgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgattggaagcttcctaatgga 31187675  T
Q  207 atgaagaatgaagatctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttgagtccaactacacgtcgcccttaatata 306  Q
    |||||||||||||| ||||||||||| || |||||||||||  || || |||||||| ||||||| ||||||| ||| | ||| ||||| ||||||||||    
T  31187674 atgaagaatgaagaactagatatgactgagtcatttgggatggctataggaagaaaacatgacctatgcttgattcctattactcgtcgtccttaatata 31187575  T
Q  307 tgtatt 312  Q
    ||||||    
T  31187574 tgtatt 31187569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 312
Target Start/End: Original strand, 31225904 - 31226209
Alignment:
Q  7 aaaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgc 106  Q
    ||||||||||||  |||||||||||||| |||||||| |||||| | |||||| || |||||||| ||||||| ||||||||||||||||| || |||||    
T  31225904 aaaggtattgggcagaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaattttgaatacataccgttcggtgc 31226003  T
Q  107 tggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaa 206  Q
    |||||| || || ||||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |||| |    
T  31226004 tggaagaagaatgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgattggaagcttcctaatgga 31226103  T
Q  207 atgaagaatgaagatctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttgagtccaactacacgtcgcccttaatata 306  Q
    |||||||||||||| ||||||||||| || ||||||||| || || || |||||||||||||||||||||||| ||| |  || ||||| |||||||||     
T  31226104 atgaagaatgaagaactagatatgactgagtcatttgggctttctgtaggaagaaaaaatgacctgtgcttgattcctatcactcgtcgtccttaatatg 31226203  T
Q  307 tgtatt 312  Q
    ||||||    
T  31226204 tgtatt 31226209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 41333000 - 41333254
Alignment:
Q  8 aaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgct 107  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||||| || |||| ||| |||||||| | || |||| ||||||||||||||||    
T  41333000 aaggtattgggttgaagctgagagttttaaacctgagaggtttgttaatagcacaattgaattcaaaggcacggacttcgaattcataccatttggtgct 41333099  T
Q  108 ggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaa 207  Q
    ||||||||||| ||||| || |||||||||| | |||| ||||||||| | ||||||||||||||||||| ||| ||||||||||||||||||||| |||    
T  41333100 ggaaggaggatgtgtcccggaattgcatttgccctaccaaacattgagctacctcttgctcaattactttgccactttgattggaagcttcccaataaaa 41333199  T
Q  208 tgaagaatgaagatctagatatgaccgaatcatttgggattactctaagaagaaa 262  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| || |||||||    
T  41333200 tgaagaatgaagaactagatatgaccgagtcatttgggattactgtaggaagaaa 41333254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 41311231 - 41311474
Alignment:
Q  8 aaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgct 107  Q
    |||||||||||||||||||||||| || |||||||| |||||| |||||||| || |||| ||| |||||||| | ||||||||||||||||||||||||    
T  41311231 aaggtattgggttgaagctgagagatttaaacctgagaggtttgttaatagcacaattgaattcaaaggcacggactttgaatacataccatttggtgct 41311330  T
Q  108 ggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaa 207  Q
    ||||||||||| ||||| || |||||||||| | |||| ||||||||| | ||||||||||||||||||||||  ||||||||||||||||||||| |||    
T  41311331 ggaaggaggatgtgtcccggaattgcatttgccctaccaaacattgagctacctcttgctcaattactttaccggtttgattggaagcttcccaataaaa 41311430  T
Q  208 tgaagaatgaagatctagatatgaccgaatcatttgggattact 251  Q
    ||||||||||||| ||||||||| | || |||||||||||||||    
T  41311431 tgaagaatgaagaactagatatggctgagtcatttgggattact 41311474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 41325090 - 41325333
Alignment:
Q  8 aaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgct 107  Q
    ||||||||||||||| ||||| ||||| |||||||| |||||| |||||||  || |||||||| |||||||  | ||||||||||||||||||||||||    
T  41325090 aaggtattgggttgatgctgaaagttttaaacctgagaggtttgttaatagtccaattgatttcaaaggcacagactttgaatacataccatttggtgct 41325189  T
Q  108 ggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaa 207  Q
    ||||| ||||| ||||| || |||||||||| |||||||||| |||| ||||||||||||   ||||||||||| ||||||||||||||||||||| |||    
T  41325190 ggaagaaggatgtgtcccggaattgcatttgccttacccaacgttgaattgcctcttgctagtttactttaccactttgattggaagcttcccaataaaa 41325289  T
Q  208 tgaagaatgaagatctagatatgaccgaatcatttgggattact 251  Q
    ||||||||||||| |||||||||||||| |||||||||||||||    
T  41325290 tgaagaatgaagaactagatatgaccgagtcatttgggattact 41325333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 7 - 312
Target Start/End: Complemental strand, 31177811 - 31177506
Alignment:
Q  7 aaaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgc 106  Q
    ||||||||||||  |||||||||||||| ||||| || |||||| |||||||| || |||||||| |||| || || ||||| |||||||| || |||||    
T  31177811 aaaggtattgggcagaagctgagagttttaaacccgagaggtttgttaatagcacaattgatttcaaaggtacaaactttgagtacataccgttcggtgc 31177712  T
Q  107 tggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaa 206  Q
    |||||| || || ||||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |||| |    
T  31177711 tggaagaagaatgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgattggaagcttcctaatgga 31177612  T
Q  207 atgaagaatgaagatctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttgagtccaactacacgtcgcccttaatata 306  Q
    |||||||||||||| ||||||||||| || ||||||||| || || ||  ||||||| ||||||| ||||||| ||| |  || ||||| | ||||||||    
T  31177611 atgaagaatgaagaactagatatgactgagtcatttgggcttgctgtagtaagaaaacatgacctatgcttgattcctataactcgtcgtctttaatata 31177512  T
Q  307 tgtatt 312  Q
    ||||||    
T  31177511 tgtatt 31177506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 41317026 - 41317269
Alignment:
Q  8 aaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgct 107  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||||| || |||||||| |||||||| | || |||| ||||||||||||||||    
T  41317026 aaggtattgggttgaagctgagagttttaaacctgagaggtttgttaatagcccaattgatttcaaaggcacggacttcgaattcataccatttggtgct 41317125  T
Q  108 ggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaa 207  Q
    ||||||||||| |||||||| |||||||||| ||| |||||  ||||| ||||||||||| | |||||||| || |||||||||||||||||||||| ||    
T  41317126 ggaaggaggatgtgtccaggtattgcatttgccttgcccaatgttgagctgcctcttgctaagttactttatcactttgattggaagcttcccaatggaa 41317225  T
Q  208 tgaagaatgaagatctagatatgaccgaatcatttgggattact 251  Q
    |||||||||||||  | |||||||| || |||||||||||||||    
T  41317226 tgaagaatgaagaattggatatgactgagtcatttgggattact 41317269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 41287196 - 41287497
Alignment:
Q  12 tattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaa 111  Q
    |||||||| |||||||||| ||||||||| || |||||| |||||||  || |||||||| | |||||  | || |||||||||||||||||||||||||    
T  41287196 tattgggtcgaagctgagaatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaa 41287295  T
Q  112 ggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaa 211  Q
    ||||||| || ||||||||||| || ||| |||||||| ||||| | ||||||||| |||||||||| || |||||||||||||||| ||||| ||||||    
T  41287296 ggaggatgtgcccaggcattgccttcggcatacccaacgttgagcttcctcttgctgaattactttatcactttgattggaagcttctcaatggaatgaa 41287395  T
Q  212 gaatgaagatctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttgagtccaactacacgtcgcccttaatatatgtat 311  Q
    |  |||||| || |||||||| || ||||||||||||||| || |||||||| ||||||| || || | ||| | ||||||| | ||||| ||| |||||    
T  41287396 gtgtgaagaacttgatatgactgagtcatttgggattactgtaggaagaaaacatgacctatgattaattcctattacacgttgtccttactatttgtat 41287495  T
Q  312 tg 313  Q
    ||    
T  41287496 tg 41287497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 41367180 - 41367450
Alignment:
Q  9 aggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctg 108  Q
    |||||||||||||| ||  ||||||| || ||||| || ||| ||||||||  | |||||||| |||||||  | |||||||||||||||||||||||||    
T  41367180 aggtattgggttgatgccaagagttttaagcctgagagatttcttaatagccgaattgatttcaaaggcacagactttgaatacataccatttggtgctg 41367279  T
Q  109 gaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaat 208  Q
    |||||||||| ||||  || |||||||||| |||||||||||| ||| | ||| | ||||| ||||||||||||||||||||||||||||| |||| |||    
T  41367280 gaaggaggatgtgtctgggtattgcatttgccttacccaacatagagctacctttagctcagttactttaccattttgattggaagcttccaaatggaat 41367379  T
Q  209 gaagaatgaagatctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttga 279  Q
    ||||||||||||  |||||||||| || ||||||||| || |  || |||||||| ||||| | |||||||    
T  41367380 gaagaatgaagaattagatatgacggagtcatttgggcttgcagtaggaagaaaacatgacttatgcttga 41367450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 41305341 - 41305593
Alignment:
Q  11 gtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctgga 110  Q
    |||||||||||||||||||||||| ||||| || |||||| ||||||||||| |||||||| |||||||  | |||||||||||||||||||||||||||    
T  41305341 gtattgggttgaagctgagagttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctgga 41305440  T
Q  111 aggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatga 210  Q
    |||||||| ||||| ||||||||||||| |||| | ||  ||||  | ||||||||| ||||||||||  | |||||||||||||||||||| | |||||    
T  41305441 aggaggatgtgtccgggcattgcatttgccttatcaaatgttgaacttcctcttgctgaattactttataactttgattggaagcttcccaacggaatga 41305540  T
Q  211 agaatgaagatctagatatgaccgaatcatttgggattactctaagaagaaaa 263  Q
       || |||| || ||||||||||| ||||||||| ||| | || ||||||||    
T  41305541 gccatcaagaacttgatatgaccgagtcatttgggcttagtgtaggaagaaaa 41305593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 41329067 - 41329310
Alignment:
Q  8 aaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgct 107  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||||  || |||||||| |||||||| | || |||| ||||||||||||||||    
T  41329067 aaggtattgggttgaagctgagagttttaaacctgagaggtttgttaatagtccaattgatttcaaaggcacggacttcgaattcataccatttggtgct 41329166  T
Q  108 ggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaa 207  Q
    ||||| ||||| |||||||| ||| |||||| | |||||||  ||||| ||||||||||| | |||||||| || |||||||||||||||||||||| ||    
T  41329167 ggaagaaggatgtgtccaggtatttcatttgccatacccaatgttgagctgcctcttgctaagttactttatcactttgattggaagcttcccaatggaa 41329266  T
Q  208 tgaagaatgaagatctagatatgaccgaatcatttgggattact 251  Q
    |||   || |||| || |||||||| || |  ||||||||||||    
T  41329267 tgagccatcaagaacttgatatgactgagttttttgggattact 41329310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 41337810 - 41338043
Alignment:
Q  11 gtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctgga 110  Q
    |||||||||||||||||||||||| |||||||| |||||| ||||||||||| |||||||| |||||||  | |||||||  ||||||||||||||||||    
T  41337810 gtattgggttgaagctgagagttttaaacctgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaattaataccatttggtgctgga 41337909  T
Q  111 aggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatga 210  Q
    || ||||| |||||||| |||||||||| ||| |||||  ||||| ||||||||||| | || ||||| || ||||||||||| ||||| |||| |||||    
T  41337910 agaaggatgtgtccaggtattgcatttgccttgcccaatgttgagctgcctcttgctaagttgctttatcactttgattggaaacttccaaatggaatga 41338009  T
Q  211 agaatgaagatctagatatgaccgaatcatttgg 244  Q
       || |||| || |||||||| |||||||||||    
T  41338010 gccatcaagaacttgatatgactgaatcatttgg 41338043  T

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Target: chr5; HSP #13
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 84 - 250
Target Start/End: Original strand, 41369940 - 41370106
Alignment:
Q  84 tttgaatacataccatttggtgctggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccatt 183  Q
    ||||||||||||||||||| ||| || |||||||| ||||||||||||   ||||||||||| ||| |||||||||||||||||   ||||||||||| |    
T  41369940 tttgaatacataccatttgatgcagggaggaggatgtgtccaggcattatgtttggcttacctaacgttgagttgcctcttgctagtttactttaccact 41370039  T
Q  184 ttgattggaagcttcccaatgaaatgaagaatgaagatctagatatgaccgaatcatttgggattac 250  Q
    |||||||||||||||||||||||||||||||||||||  | |||||||| |||||||||||||||||    
T  41370040 ttgattggaagcttcccaatgaaatgaagaatgaagaattggatatgactgaatcatttgggattac 41370106  T

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Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 41329492 - 41329592
Alignment:
Q  120 tgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaag 219  Q
    |||||| ||||||||||||| ||| ||||  ||||  ||| ||||||| ||||||||||  | |||||||| |||||| |||||| |||||| |||||||    
T  41329492 tgtccaagcattgcatttggtttagccaatgttgaactgcgtcttgctgaattactttatgactttgattgaaagctttccaatggaatgaataatgaag 41329591  T
Q  220 a 220  Q
    |    
T  41329592 a 41329592  T

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Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 41311681 - 41311755
Alignment:
Q  158 gcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaagatctagatatgac 232  Q
    |||||||||| ||||| ||||  | |||||||| ||||||||||||| |||||| |||||||| || ||||||||    
T  41311681 gcctcttgctgaattattttatgaatttgattgaaagcttcccaatggaatgaataatgaagaacttgatatgac 41311755  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 41333403 - 41333476
Alignment:
Q  158 gcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaagatctagatatga 231  Q
    |||||||||| ||||| ||||  | |||||||| ||||||||||||| |||||| |||||||| || |||||||    
T  41333403 gcctcttgctgaattattttatgaatttgattgaaagcttcccaatggaatgaataatgaagaacttgatatga 41333476  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 41342496 - 41342552
Alignment:
Q  109 gaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttg 165  Q
    |||||||||| | | ||||||||| ||||||||||| |||| |||||||||| ||||    
T  41342496 gaaggaggatgtcttcaggcattgtatttggcttactcaacgttgagttgccacttg 41342552  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 22972024 - 22971932
Alignment:
Q  39 cctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggatttgtccaggcatt 131  Q
    |||||||| ||| || |||| ||  |||||||| |||| || |||||||| ||||| ||||||||||||||||| || |||||||||||||||    
T  22972024 cctgaaagatttattgatagttctcttgatttcaaaggaacaaattttgagtacattccatttggtgctggaagaagaatttgtccaggcatt 22971932  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 22946477 - 22946386
Alignment:
Q  39 cctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggatttgtccaggcat 130  Q
    |||||||| ||| || |||| || ||||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |||||||| |||||    
T  22946477 cctgaaagatttattgatagttctgttgatttcaaaggaacaaattttgagtacattccatttggtgccggaaggagaatttgtccgggcat 22946386  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 22986350 - 22986259
Alignment:
Q  39 cctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggatttgtccaggcat 130  Q
    ||||| |||||| || |||| ||  |||||||| |||| || |||||||| ||||| |||||||||||||||||||| |||||||| |||||    
T  22986350 cctgagaggtttattgatagttctattgatttcaaaggaactaattttgagtacattccatttggtgctggaaggagaatttgtcctggcat 22986259  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 23610290 - 23610199
Alignment:
Q  39 cctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggatttgtccaggcat 130  Q
    |||||||||||| || |||||||  ||||||||  ||| || |||||||| | ||| |||||||||||||| ||||| |||||||| |||||    
T  23610290 cctgaaaggtttattgatagctctattgatttctcaggaactaattttgagttcattccatttggtgctggtaggagaatttgtcccggcat 23610199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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