View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14604_high_1 (Length: 579)
Name: NF14604_high_1
Description: NF14604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14604_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 15 - 562
Target Start/End: Original strand, 43288566 - 43289120
Alignment:
| Q |
15 |
caaagggtaaaatgcaattcaacgcgaagttgccttgcctt-----cacttacatctgcttatgaaaatatgcaagaaggttgccctagagtttgtaagc |
109 |
Q |
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| T |
43288566 |
caaagggtaaaatgcaattcaacgcgaagttgccttgccttgccttcacttacatctgcttatgaaaatatgcaagaaggttgccctagagtttgtaagc |
43288665 |
T |
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| Q |
110 |
atgagagcaaccaattactctagcaagaatatcactagaaagagtatattgaaacaaagaaagtatattttggaatggacaa-aagtttaattttgaagc |
208 |
Q |
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| T |
43288666 |
atgagagcaaccaattactctagcaagaatatcactagaaagagtgtattgaaacaaagaaagtatgttttggaatggacaagaagtttatttttgaagc |
43288765 |
T |
|
| Q |
209 |
ttgaaactggtttttggaactgatttcaaagtatgttttggaaaattcgatttcatacgcctgttaggtaatataaaagcctcttctacgaatcacaatg |
308 |
Q |
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| T |
43288766 |
ttgaaactggtttttggaactgattttaaagtatgttttggaaaattcgatttcatacgtctgttagataatataaaagcctcttctgcgaatcacaatg |
43288865 |
T |
|
| Q |
309 |
ctttagaacaccttcgtgaaaatttggtaacgttgaccaaattttgcactattcgcaaaagttactattcttattaacaatacaattggttagaaaaatt |
408 |
Q |
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| T |
43288866 |
ctttagaacaccttcgtgaaaatttggtaacgc-gaccaaattttgcactatccgcaaaagttactactgttattaacaatacaattggttagaaaaatt |
43288964 |
T |
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| Q |
409 |
agctaaaacaaccaaccggcatcgatactaatggttaggaaactatcaaaatgtattatcactaaatctttgtttgatatgtaatatttggattcttctt |
508 |
Q |
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| T |
43288965 |
agctaaaacaaccaaccggcatttatactaatggttagaaaactattcaaatgtattatcactaaatctttgtttggtatgtaatatttggatttttctt |
43289064 |
T |
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| Q |
509 |
tcattgttttcatgttattaaatgagcagtatagtgtgacac--atgatagatact |
562 |
Q |
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| T |
43289065 |
tcttcgtttttatgttattaaatgagcagtatagtgtgacacaaatgatagatact |
43289120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 11906231 - 11906304
Alignment:
| Q |
306 |
atgctttagaacaccttcgtgaa-aatttggtaacgttgaccaaattttgcactattcgcaaaagttactattc |
378 |
Q |
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| T |
11906231 |
atgctttagaacacctccgtgaacaaattggtaacactgaccaattattgcactcttcacaaaaattactattc |
11906304 |
T |
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