View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14604_high_3 (Length: 456)

Name: NF14604_high_3
Description: NF14604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14604_high_3
NF14604_high_3
[»] chr1 (11 HSPs)
chr1 (102-435)||(46587330-46587666)
chr1 (14-52)||(16005524-16005562)
chr1 (16-52)||(50559449-50559485)
chr1 (18-49)||(10558282-10558313)
chr1 (18-52)||(13385940-13385974)
chr1 (18-51)||(27389695-27389728)
chr1 (18-51)||(32374489-32374522)
chr1 (18-51)||(39424216-39424249)
chr1 (18-50)||(463514-463546)
chr1 (18-50)||(2965389-2965421)
chr1 (18-50)||(34386312-34386344)
[»] chr8 (8 HSPs)
chr8 (18-52)||(30207370-30207404)
chr8 (18-51)||(35550552-35550585)
chr8 (18-52)||(42556537-42556571)
chr8 (18-51)||(1775611-1775644)
chr8 (18-51)||(2823562-2823595)
chr8 (18-51)||(9483598-9483631)
chr8 (18-51)||(32512236-32512269)
chr8 (17-49)||(42556864-42556896)
[»] chr4 (24 HSPs)
chr4 (18-52)||(5157234-5157268)
chr4 (18-52)||(33811007-33811041)
chr4 (18-51)||(9744347-9744380)
chr4 (18-52)||(6137714-6137748)
chr4 (18-48)||(6213966-6213996)
chr4 (18-52)||(13621334-13621368)
chr4 (18-52)||(34682995-34683029)
chr4 (18-52)||(41172646-41172680)
chr4 (18-52)||(48560234-48560268)
chr4 (18-51)||(10216200-10216233)
chr4 (18-51)||(26958519-26958552)
chr4 (16-49)||(29101950-29101983)
chr4 (18-51)||(30258075-30258108)
chr4 (18-51)||(41172390-41172423)
chr4 (18-51)||(42807859-42807892)
chr4 (18-51)||(46106637-46106670)
chr4 (18-51)||(49426164-49426197)
chr4 (18-51)||(54742411-54742444)
chr4 (18-50)||(142598-142630)
chr4 (18-50)||(5046590-5046622)
chr4 (18-50)||(6946609-6946641)
chr4 (18-46)||(17377730-17377758)
chr4 (20-52)||(36955322-36955354)
chr4 (18-50)||(47382388-47382420)
[»] chr3 (16 HSPs)
chr3 (18-52)||(17065937-17065971)
chr3 (18-50)||(17604884-17604916)
chr3 (18-52)||(3800146-3800180)
chr3 (18-52)||(27359947-27359981)
chr3 (18-52)||(45293164-45293198)
chr3 (18-52)||(47461906-47461940)
chr3 (18-48)||(51952168-51952198)
chr3 (18-51)||(1376206-1376239)
chr3 (18-51)||(30347724-30347757)
chr3 (18-51)||(51147960-51147993)
chr3 (18-50)||(6748601-6748633)
chr3 (16-48)||(7848485-7848517)
chr3 (18-50)||(12896849-12896881)
chr3 (16-48)||(31039763-31039795)
chr3 (18-50)||(45059483-45059515)
chr3 (18-50)||(53581511-53581543)
[»] chr7 (20 HSPs)
chr7 (18-51)||(41037320-41037353)
chr7 (18-52)||(938856-938890)
chr7 (18-52)||(8047919-8047953)
chr7 (18-52)||(15230281-15230315)
chr7 (18-52)||(22479423-22479457)
chr7 (18-52)||(24720478-24720512)
chr7 (18-52)||(26380021-26380055)
chr7 (18-52)||(27168454-27168488)
chr7 (18-52)||(37138881-37138915)
chr7 (18-52)||(48454748-48454782)
chr7 (18-51)||(7437744-7437777)
chr7 (18-51)||(12080916-12080949)
chr7 (18-51)||(32577787-32577820)
chr7 (18-51)||(38368057-38368090)
chr7 (18-50)||(11327814-11327846)
chr7 (17-49)||(19069360-19069392)
chr7 (18-50)||(25818447-25818479)
chr7 (20-52)||(27812161-27812193)
chr7 (19-51)||(28605659-28605691)
chr7 (18-50)||(34986488-34986520)
[»] chr5 (12 HSPs)
chr5 (18-51)||(2528713-2528746)
chr5 (18-49)||(15809176-15809207)
chr5 (16-51)||(17209823-17209858)
chr5 (18-49)||(22213076-22213107)
chr5 (18-52)||(4736996-4737030)
chr5 (18-52)||(17421639-17421673)
chr5 (18-52)||(40234277-40234311)
chr5 (18-51)||(26906099-26906132)
chr5 (18-47)||(31240447-31240476)
chr5 (18-50)||(6436370-6436402)
chr5 (16-52)||(17233113-17233149)
chr5 (18-50)||(31752393-31752425)
[»] scaffold0002 (1 HSPs)
scaffold0002 (18-52)||(452315-452349)
[»] chr6 (6 HSPs)
chr6 (18-52)||(33730478-33730512)
chr6 (18-51)||(4838233-4838266)
chr6 (18-51)||(15881875-15881908)
chr6 (18-51)||(18102646-18102679)
chr6 (18-51)||(31133082-31133115)
chr6 (18-50)||(18154503-18154535)
[»] chr2 (12 HSPs)
chr2 (18-52)||(3769778-3769812)
chr2 (18-52)||(15554238-15554272)
chr2 (18-52)||(23175351-23175385)
chr2 (18-52)||(23586608-23586642)
chr2 (18-52)||(34082767-34082801)
chr2 (18-52)||(37169756-37169790)
chr2 (18-50)||(3352297-3352329)
chr2 (18-50)||(3769412-3769444)
chr2 (18-50)||(18370432-18370464)
chr2 (18-46)||(29512041-29512069)
chr2 (18-50)||(33173711-33173743)
chr2 (18-50)||(33740154-33740186)
[»] scaffold1259 (1 HSPs)
scaffold1259 (18-51)||(10-43)
[»] scaffold0015 (1 HSPs)
scaffold0015 (16-52)||(9933-9968)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 102 - 435
Target Start/End: Original strand, 46587330 - 46587666
Alignment:
Q  102 tttggaggggatatatccttggtcatgcctaacttgaaaataagctaattgttcatggatagaaagagataacattacccttttgaactttctcttttac 201  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  46587330 tttggagcagatatatccttggttatgcctaacttgaaaataagctaattgttcatggatagaaagagataacattacc-ttttgaactttctcttttac 46587428  T
Q  202 aggatgacatg----tttcaaatgttttctctcatgaaatattggattagaatctatgtgacgtgctctttaattatcacaatataatattggttgcatg 297  Q
     |||||||||     ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||| |||||    
T  46587429 cggatgacattctattttcaaatgttttctctcatgaaatattgaattagaatctatgtgatgtgctctttaattatcacaatataacattggtagcatg 46587528  T
Q  298 gtacataaaatgttcaagtctttaagcatacctaacaataattgaagttcacatgtcactataaaaagagctctataattttagtcatttaaatatgaag 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46587529 gtacataaaatgttcaagtctttaagcatacctaacaataattgaagttcacatgtcactataaaaagagctctataattttagtcatttaaatatgaag 46587628  T
Q  398 tcctagttaagatttttaaaaaataaatgctaacgtgt 435  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  46587629 tcctagttaagatttttaaaagataaatgctaacgtgt 46587666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 16005562 - 16005524
Alignment:
Q  14 ttctacataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  16005562 ttctacataaaaactagtgggtgtgttctagcaaatccc 16005524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 50559449 - 50559485
Alignment:
Q  16 ctacataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||||| ||||||||||||||||||    
T  50559449 ctacataaaaactagtgggtgtgttctagcaaatccc 50559485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 10558282 - 10558313
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaat 49  Q
    ||||||||||||||||||||||||||||||||    
T  10558282 acataaaaactagtggatgtgttctagcaaat 10558313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 13385940 - 13385974
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  13385940 acataaaaactagtgggtgtgttctagcaaatccc 13385974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 27389695 - 27389728
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  27389695 acataaaaactagtgggtgtgttctagcaaatcc 27389728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 32374522 - 32374489
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  32374522 acataaaaactagtgggtgtgttctagcaaatcc 32374489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 39424249 - 39424216
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  39424249 acataaaaactagtgggtgtgttctagcaaatcc 39424216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 463514 - 463546
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  463514 acataaaaactagtgggtgtgttctagcaaatc 463546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 2965389 - 2965421
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  2965389 acataaaaactagtgggtgtgttctagcaaatc 2965421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 34386344 - 34386312
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||||||| ||||||||||||    
T  34386344 acataaaaactagtggatgtattctagcaaatc 34386312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 30207370 - 30207404
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||||||||||||||||||||||    
T  30207370 acataaaaactagtggatgtgttctagcaaatccc 30207404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 35550585 - 35550552
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    ||||||||||||||||||||||||||||||||||    
T  35550585 acataaaaactagtggatgtgttctagcaaatcc 35550552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 42556537 - 42556571
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  42556537 acataaaaactagtgggtgtgttctagcaaatccc 42556571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 1775611 - 1775644
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  1775611 acataaaaactagtgggtgtgttctagcaaatcc 1775644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 2823595 - 2823562
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  2823595 acataaaaactagtgggtgtgttctagcaaatcc 2823562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 9483631 - 9483598
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  9483631 acataaaaactagtgggtgtgttctagcaaatcc 9483598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 32512236 - 32512269
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||||||||||||| |||||||    
T  32512236 acataaaaactagtggatgtgttctaacaaatcc 32512269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 42556864 - 42556896
Alignment:
Q  17 tacataaaaactagtggatgtgttctagcaaat 49  Q
    |||||||||||||||||||||||| ||||||||    
T  42556864 tacataaaaactagtggatgtgttatagcaaat 42556896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 5157234 - 5157268
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||||||||||||||||||||||    
T  5157234 acataaaaactagtggatgtgttctagcaaatccc 5157268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 33811041 - 33811007
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||||||||||||||||||||||    
T  33811041 acataaaaactagtggatgtgttctagcaaatccc 33811007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 9744347 - 9744380
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    ||||||||||||||||||||||||||||||||||    
T  9744347 acataaaaactagtggatgtgttctagcaaatcc 9744380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 6137714 - 6137748
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  6137714 acataaaaactagtgggtgtgttctagcaaatccc 6137748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 6213996 - 6213966
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaa 48  Q
    |||||||||||||||||||||||||||||||    
T  6213996 acataaaaactagtggatgtgttctagcaaa 6213966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 13621334 - 13621368
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  13621334 acataaaaactagtgggtgtgttctagcaaatccc 13621368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 34683029 - 34682995
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  34683029 acataaaaactagtgggtgtgttctagcaaatccc 34682995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 41172646 - 41172680
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  41172646 acataaaaactagtgggtgtgttctagcaaatccc 41172680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 48560234 - 48560268
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  48560234 acataaaaactagtgggtgtgttctagcaaatccc 48560268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 10216233 - 10216200
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||| |||||||||||||||||||    
T  10216233 acataaaaactagttgatgtgttctagcaaatcc 10216200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 26958552 - 26958519
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  26958552 acataaaaactagtgggtgtgttctagcaaatcc 26958519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 29101983 - 29101950
Alignment:
Q  16 ctacataaaaactagtggatgtgttctagcaaat 49  Q
    |||||||||||||||||| |||||||||||||||    
T  29101983 ctacataaaaactagtgggtgtgttctagcaaat 29101950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 30258108 - 30258075
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  30258108 acataaaaactagtgggtgtgttctagcaaatcc 30258075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 41172423 - 41172390
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  41172423 acataaaaactagtgggtgtgttctagcaaatcc 41172390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 42807892 - 42807859
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  42807892 acataaaaactagtgggtgtgttctagcaaatcc 42807859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 46106670 - 46106637
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  46106670 acataaaaactagtgggtgtgttctagcaaatcc 46106637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 49426164 - 49426197
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  49426164 acataaaaactagtgggtgtgttctagcaaatcc 49426197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 54742444 - 54742411
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  54742444 acataaaaactagtgggtgtgttctagcaaatcc 54742411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 142630 - 142598
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  142630 acataaaaactagtgggtgtgttctagcaaatc 142598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 5046622 - 5046590
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  5046622 acataaaaactagtgggtgtgttctagcaaatc 5046590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 6946641 - 6946609
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  6946641 acataaaaactagtgggtgtgttctagcaaatc 6946609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 17377730 - 17377758
Alignment:
Q  18 acataaaaactagtggatgtgttctagca 46  Q
    |||||||||||||||||||||||||||||    
T  17377730 acataaaaactagtggatgtgttctagca 17377758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 36955354 - 36955322
Alignment:
Q  20 ataaaaactagtggatgtgttctagcaaatccc 52  Q
    ||||||||||||| |||||||||||||||||||    
T  36955354 ataaaaactagtgaatgtgttctagcaaatccc 36955322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 47382388 - 47382420
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  47382388 acataaaaactagtgggtgtgttctagcaaatc 47382420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 17065937 - 17065971
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||||||||||||||||||||||    
T  17065937 acataaaaactagtggatgtgttctagcaaatccc 17065971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 17604916 - 17604884
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||||||||||||||||||||    
T  17604916 acataaaaactagtggatgtgttctagcaaatc 17604884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 3800180 - 3800146
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  3800180 acataaaaactagtgggtgtgttctagcaaatccc 3800146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 27359981 - 27359947
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  27359981 acataaaaactagtgggtgtgttctagcaaatccc 27359947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 45293164 - 45293198
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  45293164 acataaaaactagtgggtgtgttctagcaaatccc 45293198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 47461906 - 47461940
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  47461906 acataaaaactagtgggtgtgttctagcaaatccc 47461940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 51952198 - 51952168
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaa 48  Q
    |||||||||||||||||||||||||||||||    
T  51952198 acataaaaactagtggatgtgttctagcaaa 51952168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 1376206 - 1376239
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  1376206 acataaaaactagtgggtgtgttctagcaaatcc 1376239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 30347757 - 30347724
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  30347757 acataaaaactagtgggtgtgttctagcaaatcc 30347724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 51147993 - 51147960
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  51147993 acataaaaactagtgggtgtgttctagcaaatcc 51147960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 6748633 - 6748601
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  6748633 acataaaaactagtgggtgtgttctagcaaatc 6748601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 7848517 - 7848485
Alignment:
Q  16 ctacataaaaactagtggatgtgttctagcaaa 48  Q
    |||||||||||||||||| ||||||||||||||    
T  7848517 ctacataaaaactagtgggtgtgttctagcaaa 7848485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 12896849 - 12896881
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  12896849 acataaaaactagtgggtgtgttctagcaaatc 12896881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 31039763 - 31039795
Alignment:
Q  16 ctacataaaaactagtggatgtgttctagcaaa 48  Q
    |||||||||||||||||| ||||||||||||||    
T  31039763 ctacataaaaactagtgggtgtgttctagcaaa 31039795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 45059515 - 45059483
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  45059515 acataaaaactagtgggtgtgttctagcaaatc 45059483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 53581543 - 53581511
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  53581543 acataaaaactagtgggtgtgttctagcaaatc 53581511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 41037353 - 41037320
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    ||||||||||||||||||||||||||||||||||    
T  41037353 acataaaaactagtggatgtgttctagcaaatcc 41037320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 938890 - 938856
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  938890 acataaaaactagtgggtgtgttctagcaaatccc 938856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 8047953 - 8047919
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  8047953 acataaaaactagtgggtgtgttctagcaaatccc 8047919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 15230281 - 15230315
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  15230281 acataaaaactagtgggtgtgttctagcaaatccc 15230315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 22479423 - 22479457
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  22479423 acataaaaactagtgggtgtgttctagcaaatccc 22479457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 24720478 - 24720512
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  24720478 acataaaaactagtgggtgtgttctagcaaatccc 24720512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 26380055 - 26380021
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  26380055 acataaaaactagtgggtgtgttctagcaaatccc 26380021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 27168454 - 27168488
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  27168454 acataaaaactagtgggtgtgttctagcaaatccc 27168488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 37138915 - 37138881
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  37138915 acataaaaactagtgggtgtgttctagcaaatccc 37138881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 48454748 - 48454782
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  48454748 acataaaaactagtgggtgtgttctagcaaatccc 48454782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 7437777 - 7437744
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  7437777 acataaaaactagtgggtgtgttctagcaaatcc 7437744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 12080916 - 12080949
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  12080916 acataaaaactagtgggtgtgttctagcaaatcc 12080949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 32577787 - 32577820
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  32577787 acataaaaactagtgggtgtgttctagcaaatcc 32577820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 38368057 - 38368090
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  38368057 acataaaaactagtgggtgtgttctagcaaatcc 38368090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 11327814 - 11327846
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  11327814 acataaaaactagtgggtgtgttctagcaaatc 11327846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 19069392 - 19069360
Alignment:
Q  17 tacataaaaactagtggatgtgttctagcaaat 49  Q
    ||||||||||||||||| |||||||||||||||    
T  19069392 tacataaaaactagtgggtgtgttctagcaaat 19069360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 25818479 - 25818447
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  25818479 acataaaaactagtgggtgtgttctagcaaatc 25818447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 27812161 - 27812193
Alignment:
Q  20 ataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||| ||||||||||||||||||    
T  27812161 ataaaaactagtgggtgtgttctagcaaatccc 27812193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 28605659 - 28605691
Alignment:
Q  19 cataaaaactagtggatgtgttctagcaaatcc 51  Q
    ||||||||||||||| |||||||||||||||||    
T  28605659 cataaaaactagtgggtgtgttctagcaaatcc 28605691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 34986520 - 34986488
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  34986520 acataaaaactagtgggtgtgttctagcaaatc 34986488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 2528746 - 2528713
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    ||||||||||||||||||||||||||||||||||    
T  2528746 acataaaaactagtggatgtgttctagcaaatcc 2528713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 15809176 - 15809207
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaat 49  Q
    ||||||||||||||||||||||||||||||||    
T  15809176 acataaaaactagtggatgtgttctagcaaat 15809207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 17209858 - 17209823
Alignment:
Q  16 ctacataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||| |||||||||||||||||||||    
T  17209858 ctacataaaaactaatggatgtgttctagcaaatcc 17209823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 22213107 - 22213076
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaat 49  Q
    ||||||||||||||||||||||||||||||||    
T  22213107 acataaaaactagtggatgtgttctagcaaat 22213076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 4736996 - 4737030
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  4736996 acataaaaactagtgggtgtgttctagcaaatccc 4737030  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 17421673 - 17421639
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  17421673 acataaaaactagtgggtgtgttctagcaaatccc 17421639  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 40234277 - 40234311
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  40234277 acataaaaactagtgggtgtgttctagcaaatccc 40234311  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 26906099 - 26906132
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  26906099 acataaaaactagtgggtgtgttctagcaaatcc 26906132  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 31240447 - 31240476
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaa 47  Q
    ||||||||||||||||||||||||||||||    
T  31240447 acataaaaactagtggatgtgttctagcaa 31240476  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 6436402 - 6436370
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  6436402 acataaaaactagtgggtgtgttctagcaaatc 6436370  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 17233113 - 17233149
Alignment:
Q  16 ctacataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  17233113 ctacataaaaactagtgggtgtgttctaccaaatccc 17233149  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 31752425 - 31752393
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  31752425 acataaaaactagtggttgtgttctagcaaatc 31752393  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 452349 - 452315
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  452349 acataaaaactagtgggtgtgttctagcaaatccc 452315  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 33730512 - 33730478
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  33730512 acataaaaactagtgggtgtgttctagcaaatccc 33730478  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 4838266 - 4838233
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  4838266 acataaaaactagtgggtgtgttctagcaaatcc 4838233  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 15881908 - 15881875
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  15881908 acataaaaactagtgggtgtgttctagcaaatcc 15881875  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 18102679 - 18102646
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||| |||||||||||||||||||    
T  18102679 acataaaaactagtcgatgtgttctagcaaatcc 18102646  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 31133082 - 31133115
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  31133082 acataaaaactagtgggtgtgttctagcaaatcc 31133115  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 18154535 - 18154503
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  18154535 acataaaaactagtgggtgtgttctagcaaatc 18154503  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 3769778 - 3769812
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||| ||||||||||||||||||||||    
T  3769778 acataaaaactaatggatgtgttctagcaaatccc 3769812  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 15554238 - 15554272
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||| ||||||||||||||||||||||    
T  15554238 acataaaaactaatggatgtgttctagcaaatccc 15554272  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 23175385 - 23175351
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  23175385 acataaaaactagtgggtgtgttctagcaaatccc 23175351  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 23586642 - 23586608
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  23586642 acataaaaactagtgggtgtgttctagcaaatccc 23586608  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 34082767 - 34082801
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  34082767 acataaaaactagtgggtgtgttctagcaaatccc 34082801  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 37169756 - 37169790
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatccc 52  Q
    ||||||||| |||||||||||||||||||||||||    
T  37169756 acataaaaattagtggatgtgttctagcaaatccc 37169790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 3352297 - 3352329
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||||||| ||||||||||||    
T  3352297 acataaaaactagtggatgtattctagcaaatc 3352329  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 3769444 - 3769412
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  3769444 acataaaaactagtgggtgtgttctagcaaatc 3769412  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 18370432 - 18370464
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  18370432 acataaaaactagtgggtgtgttctagcaaatc 18370464  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 29512069 - 29512041
Alignment:
Q  18 acataaaaactagtggatgtgttctagca 46  Q
    |||||||||||||||||||||||||||||    
T  29512069 acataaaaactagtggatgtgttctagca 29512041  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 33173711 - 33173743
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    ||||||||| |||||||||||||||||||||||    
T  33173711 acataaaaattagtggatgtgttctagcaaatc 33173743  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 33740154 - 33740186
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  33740154 acataaaaactagtgggtgtgttctagcaaatc 33740186  T

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Target: scaffold1259 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1259
Description:

Target: scaffold1259; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 10 - 43
Alignment:
Q  18 acataaaaactagtggatgtgttctagcaaatcc 51  Q
    |||||||||||||||| |||||||||||||||||    
T  10 acataaaaactagtgggtgtgttctagcaaatcc 43  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 9933 - 9968
Alignment:
Q  16 ctacataaaaactagtggatgtgttctagcaaatccc 52  Q
    |||||||||||||||||| ||||||||||||||||||    
T  9933 ctacataaaaactagtgg-tgtgttctagcaaatccc 9968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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