View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14604_high_8 (Length: 278)
Name: NF14604_high_8
Description: NF14604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14604_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 24026026 - 24025926
Alignment:
| Q |
20 |
attgggtcctgacaactctccatacccaatttttgaatagaagaagtaaacaatcctttgtataagatgatatataagttaatataacatatatgaactt |
119 |
Q |
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| T |
24026026 |
attgggtcctgacaactctccatacccaatttttgaatagaagaagtaaacaatcctttgtataagatgatatataagttaatataacatatatgaactt |
24025927 |
T |
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| Q |
120 |
c |
120 |
Q |
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| T |
24025926 |
c |
24025926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 162 - 268
Target Start/End: Complemental strand, 24025884 - 24025778
Alignment:
| Q |
162 |
gtatggcgggctttaagaagttcaagttcttagaccctcaaaacttaaaagtaaaatataatcaagattatggcagnnnnnnntattactatttcctagt |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24025884 |
gtatggcgggctttaagaagttcaagttcttagaccctcaaaacttaaaagtaaaatataatcaagattatggcagaaaaaaatattactatttcctagt |
24025785 |
T |
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| Q |
262 |
tcctatg |
268 |
Q |
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||||||| |
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| T |
24025784 |
tcctatg |
24025778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 19745696 - 19745753
Alignment:
| Q |
63 |
aagtaaacaatcctttgtataagatgatatataagttaatataacatatatgaacttc |
120 |
Q |
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|||||||||| | |||| |||||| |||||||||||||||||| ||||||| |||||| |
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| T |
19745696 |
aagtaaacaaccatttgcataagacgatatataagttaatatatcatatataaacttc |
19745753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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