View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14604_low_10 (Length: 255)

Name: NF14604_low_10
Description: NF14604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14604_low_10
NF14604_low_10
[»] chr4 (14 HSPs)
chr4 (1-246)||(2621028-2621273)
chr4 (1-141)||(2367648-2367788)
chr4 (12-111)||(2486265-2486364)
chr4 (1-94)||(5106333-5106426)
chr4 (44-109)||(2547522-2547587)
chr4 (1-121)||(12124771-12124891)
chr4 (1-97)||(2472039-2472135)
chr4 (1-111)||(2491075-2491185)
chr4 (1-94)||(2519180-2519273)
chr4 (1-94)||(5102106-5102199)
chr4 (1-141)||(2373212-2373351)
chr4 (27-111)||(2525730-2525814)
chr4 (66-108)||(1517029-1517071)
chr4 (26-114)||(12126852-12126940)
[»] chr7 (1 HSPs)
chr7 (9-94)||(2576415-2576500)
[»] chr1 (1 HSPs)
chr1 (1-97)||(15837979-15838075)
[»] chr5 (1 HSPs)
chr5 (66-122)||(12846948-12847004)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 2621273 - 2621028
Alignment:
Q  1 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2621273 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggatac 2621174  T
Q  101 gagggagagaggttccaagtaatggttgttgtcgccgtcgtcaactaacttgaagatacactcccaccactcctctggtaagaatgaacatgtttccgcc 200  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621173 gagggagagaggttcccagtaatggttgttgtcgccatcgtcaactaacttgaagatacactcccaccactcctctggtaagaatgaacatgtttccgcc 2621074  T
Q  201 attgtttttggaatattgaatgtcaatgattatgataatgatgatg 246  Q
    ||||||| |||||||||| |||||||| | ||||| ||||||||||    
T  2621073 attgtttgtggaatattggatgtcaataactatgacaatgatgatg 2621028  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 2367788 - 2367648
Alignment:
Q  1 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacac 100  Q
    ||||||| | ||| ||||||  || ||||||||| ||||||||||| ||||  |||||||| || ||||||||||||||||| | ||| |||||||| ||    
T  2367788 ggaacctttggaaaaggcgataaaggaaagggattgttttatcggacattgctatggagaatcggagacggttggtgatggagagaaattgtttggagac 2367689  T
Q  101 gagggagagaggttccaagtaatggttgttgtcgccgtcgt 141  Q
    || ||| ||||||||||||||  |||||||||||| |||||    
T  2367688 gatggaaagaggttccaagtagcggttgttgtcgctgtcgt 2367648  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 2486265 - 2486364
Alignment:
Q  12 aagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagag 111  Q
    ||||| ||| ||| ||||||||| ||||| |||||||||||||  ||||| || ||||||||||||||||||| ||||||||| || |||||||||||||    
T  2486265 aagagacgatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttggtgatggacagaaactgttttgagacgagggagagag 2486364  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 5106426 - 5106333
Alignment:
Q  1 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 94  Q
    ||||||| | |||||||||| |||||||||||||||||| ||  | ||||||||  ||||| ||  ||||||||||||||||||||||||||||    
T  5106426 ggaaccttttgaagaggcgatgaatgaaagggatggtttgattagtgattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttt 5106333  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 2547522 - 2547587
Alignment:
Q  44 ggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagag 109  Q
    |||||||||||  |||||||| ||||||||||||||||||| |||||||||||| |||| ||||||    
T  2547522 ggagattgtgactgagaaccggagacggttggtgatggacagaaactgtttggagacgatggagag 2547587  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 12124771 - 12124891
Alignment:
Q  1 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacac 100  Q
    ||||||| | |||||||||   || ||||||||| |||| ||| ||||||| |||||| ||  | ||||||||||||||||| | ||| |||||||| ||    
T  12124771 ggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggaaaattggagacggttggtgatggagagaaattgtttggagac 12124870  T
Q  101 gagggagagaggttccaagta 121  Q
     | ||||||||||||||||||    
T  12124871 aatggagagaggttccaagta 12124891  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 2472039 - 2472135
Alignment:
Q  1 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgga 97  Q
    ||||||| ||||||||| || ||| ||||||||| |||| |  | ||||||||| |||||| |  ||||| ||||||||||| ||||||||||||||    
T  2472039 ggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcagagacgattggtgatggagaaaaactgtttgga 2472135  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 2491075 - 2491185
Alignment:
Q  1 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacac 100  Q
    ||||||| || ||||| |||  || ||||||||| |||  ||||||||||||||  || || || |||||||| |||||||||| ||||||||| || ||    
T  2491075 ggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaaactgttttgagac 2491174  T
Q  101 gagggagagag 111  Q
    ||| |||||||    
T  2491175 gagtgagagag 2491185  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 2519180 - 2519273
Alignment:
Q  1 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 94  Q
    ||||||| || ||||| ||| ||| ||||||||| |||| ||| ||||||||||  ||| | || | ||||||||||||||||| |||||||||    
T  2519180 ggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacggttggtgatggacagaaactgttt 2519273  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 5102199 - 5102106
Alignment:
Q  1 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 94  Q
    ||||||| ||||| ||| ||||||||||||||||||||  ||| | ||||||||  ||||| || ||||  || ||||| ||||||||||||||    
T  5102199 ggaacctttcgaaaaggagaggaatgaaagggatggttcgatcagtgattgtgaccgagaatcgaagactattagtgatagacaaaaactgttt 5102106  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 2373351 - 2373212
Alignment:
Q  1 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacac 100  Q
    ||||||| | ||||||||||  || |||||| || ||||||||| | ||||  |||||||| || ||| | ||||||||||| | ||| |||||||| ||    
T  2373351 ggaacctttggaagaggcgattaaggaaaggaattgttttatcg-acattgctatggagaatcggagatgattggtgatggagagaaattgtttggaaac 2373253  T
Q  101 gagggagagaggttccaagtaatggttgttgtcgccgtcgt 141  Q
     | |||||||||||| |||||  || |||||| ||||||||    
T  2373252 aacggagagaggttcgaagtagcggctgttgttgccgtcgt 2373212  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 2525730 - 2525814
Alignment:
Q  27 aaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagag 111  Q
    |||||||| |||  || |||||||||||   |||| || |||| |||||||||||||| ||||||||| || |||||||||||||    
T  2525730 aaagggatagttgcattggagattgtgaccaagaatcgaagactgttggtgatggacagaaactgttttgagacgagggagagag 2525814  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 1517071 - 1517029
Alignment:
Q  66 agacggttggtgatggacaaaaactgtttggacacgagggaga 108  Q
    |||||||||||||||||||| || |||||||| ||||||||||    
T  1517071 agacggttggtgatggacaagaattgtttggaaacgagggaga 1517029  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 12126852 - 12126940
Alignment:
Q  26 gaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagaggtt 114  Q
    |||||||||  ||| ||| |||| || |||||||||  | ||||||||||||||||| | ||| |||||||| || | |||||||||||    
T  12126852 gaaagggattttttcatctgagactgcgatggagaataggagacggttggtgatggagagaaattgtttggagacaatggagagaggtt 12126940  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 2576500 - 2576415
Alignment:
Q  9 tcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 94  Q
    ||||||||||||  ||||||||||||||||  ||||| ||||||||  ||||| || ||||| ||||||||||| |||||||||||    
T  2576500 tcgaagaggcgacaaatgaaagggatggttcaatcggtgattgtgaccgagaatcgaagacgattggtgatggataaaaactgttt 2576415  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 15838075 - 15837979
Alignment:
Q  1 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgga 97  Q
    ||||||| | |||||||  ||||||||||||||| |||| |||   |||| ||| |||||| || ||||||||||||||||| | ||||||||||||    
T  15838075 ggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatggagagaaactgtttgga 15837979  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 12846948 - 12847004
Alignment:
Q  66 agacggttggtgatggacaaaaactgtttggacacgagggagagaggttccaagtaa 122  Q
    ||||||||||||||||| |  ||||| ||||| |||||||||||| |||||||||||    
T  12846948 agacggttggtgatggagaggaactgcttggaaacgagggagagatgttccaagtaa 12847004  T

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