View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14604_low_2 (Length: 526)
Name: NF14604_low_2
Description: NF14604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14604_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 163 - 509
Target Start/End: Original strand, 37844770 - 37845115
Alignment:
| Q |
163 |
tgatttttagtggtatgatattgcaaatctctgactattaatttaacctaaagccttgctatttaagtttattgtactttctttccacaacggctttggt |
262 |
Q |
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| T |
37844770 |
tgatttttagtggtatgatattgcaaatctctgactattaatttaacctaaagccttgctatttaagtttattgtactttctttccacaacggctttggt |
37844869 |
T |
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| Q |
263 |
ggaaactatgggatcaatgcttcatatagccgtctttatgttgatgaacttgtgttccacgtgtttaagttcattaaattgctatgtttgtaacgacctt |
362 |
Q |
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| T |
37844870 |
ggaaactatgggatcaatgcttcatatagccgtctttatgttgatgaacttgtgttccacgtgtttaagttcattaaattgctatgtttgtaacgacctt |
37844969 |
T |
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| Q |
363 |
gggtagtgtttaaaacacgtgattatatatcacacaatagtagttcgtgtccaaaactgctaatcagactttatattggttttcaatatagaactgatca |
462 |
Q |
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| T |
37844970 |
gggtagtgtttaaaacacgtga-tgtatatcacacaatagtagttcgtgtccaaaactgctaatcagactttatattggttttcaatatagaactgatca |
37845068 |
T |
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| Q |
463 |
aataatttattttttacaatctgacaatcattaggcatcgtaaacac |
509 |
Q |
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| T |
37845069 |
aataatttattttttacaatctgacaatcattaggcatcgtaaacac |
37845115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 37844519 - 37844648
Alignment:
| Q |
9 |
atgaaattgaaagctggttggatatatttttagttttaattgtttaagttgacattttggattttatatcactggagtgatttgaactattttaagtgga |
108 |
Q |
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| T |
37844519 |
atgaaattgaaagctggttagatatatttttagttttaattgtttaagttgacattttggattttatatcactggagtgatttgaactattttaagtgga |
37844618 |
T |
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| Q |
109 |
agaacaattaaccactactatgaaaataaa |
138 |
Q |
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| T |
37844619 |
agaacaattaaccactactaagaaaataaa |
37844648 |
T |
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