View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14604_low_4 (Length: 422)
Name: NF14604_low_4
Description: NF14604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14604_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 27 - 422
Target Start/End: Original strand, 33272836 - 33273231
Alignment:
| Q |
27 |
tatatgcctaaccaaataaaactagcttagaaaaaagatcaaggattttaaataccgggcatattaatggttgcgatccccttataatctttgatatgtg |
126 |
Q |
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| T |
33272836 |
tatatgcctaaccaaataaaactagcttagaaaaaagatcaaggattttaaataccgggcatattaatggttgcgatccccttataatctttgatatgtg |
33272935 |
T |
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| Q |
127 |
aaaatcaaagtgaaatacggtggatgcaacttcaatcacattgttttacaattttggcaacataaaaattgttatattgtgatctagattgcgattgtga |
226 |
Q |
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| T |
33272936 |
aaaatcaaagtgaaatacggtggatgcaacttcaatcacattgttttacaattttggcaacataaaaattgttatattgtgatctagattgcgattgtga |
33273035 |
T |
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| Q |
227 |
acctttatttataacccttagcagaaggtacactcttcgctaattgtcgacgaccatccctcgaaacactagttggatcaaccacatctcccaatcttcc |
326 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33273036 |
acctttatttataacccttagcagaaggtacactcttagctaattgtcgacgaccatccctcgaaacactagttggatcaaccacatctcccaatcttcc |
33273135 |
T |
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| Q |
327 |
acatacaacaccatgcttgtggaaaaaccctttccttatcttctgcttctttgtccttttaacaccatcagccacacttgtactagcaatattgtc |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
33273136 |
acatacaacaccatgcttgtggaaaaaccctttccttatcttcttcttctttgtccttttaacaccatcatctacacttgtactagcaatattgtc |
33273231 |
T |
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