View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14604_low_5 (Length: 382)
Name: NF14604_low_5
Description: NF14604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14604_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 33273693 - 33273355
Alignment:
| Q |
1 |
tttaacatacgacgtgttcaacaataaataatatacaaacatacctaacctaatttccctaaccttatagcgtggaacataattttcccacacattcatt |
100 |
Q |
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| T |
33273693 |
tttaacatacgacgtgttcaacaataaataatatacaaacatacctaacctaatttccctaaccttatagcgtggaacataattttcccacacattcatt |
33273594 |
T |
|
| Q |
101 |
tcatggcttccaagctctcatttctaaactctctcactcaaagaaagaaacaaaataatgctattaaagatgatcacatcaatgaagacatagccatagt |
200 |
Q |
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| T |
33273593 |
tcatggcttccaagctctcatttctaaactctctcactcaaagaaagaaacaaaataatgctattaaagatgatcacatcaatgaagacatagccatagt |
33273494 |
T |
|
| Q |
201 |
gaaagcagctgcatgggcatggcatcaacgtggttctggatcatgtaatgaaggagaagctaattcaagtaatttttatgttacaaggagtaatattcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33273493 |
gaaagcagctgcatgggcatggcatcaacgtggttctggatcatgtaatgaaggagaagctaattcaagtaatttttatgttacaaggagtaatattcat |
33273394 |
T |
|
| Q |
301 |
cgtgaaccaagaccttctcgttacaaattaaaagcaatg |
339 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
33273393 |
cgtgaaccaagaccttctcgttacaaattagaagcaatg |
33273355 |
T |
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