View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14604_low_7 (Length: 339)
Name: NF14604_low_7
Description: NF14604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14604_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 117 - 323
Target Start/End: Original strand, 31047859 - 31048064
Alignment:
| Q |
117 |
attggatcttataaaggcttgtaaatcatatgtcttagttttcatagaactccttcaaagttcttcaatttcgtatccatgttaataactccatttaaca |
216 |
Q |
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| T |
31047859 |
attggatctgataaaggcttgtaaatcatatgtcttagttttcatagaaccccttcaaagtccttcaatttcgtatccatgttaataactccatttaacc |
31047958 |
T |
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| Q |
217 |
caagaaaaaactannnnnnnctgatcttgattatttaagtttgtaatgttttaatccacttttgttttgctgatttatttaagatataaatctactctga |
316 |
Q |
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| T |
31047959 |
caagaaaaaacta-ttttttctaatcttgattatttaagtttgtaattttttaatccacttttgttttgcttatttatttaagatataaatctattctga |
31048057 |
T |
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| Q |
317 |
aatattt |
323 |
Q |
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||||||| |
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| T |
31048058 |
aatattt |
31048064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 31043706 - 31043753
Alignment:
| Q |
11 |
tatgtattagagtaaaaaagaaattatagactataatatataagttat |
58 |
Q |
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| T |
31043706 |
tatgtattagagtaaaaaagaaattatagactataatatataagttat |
31043753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 31047073 - 31047026
Alignment:
| Q |
58 |
tatgtatgatgttcagtttcgttcaattttaaaaaagaaatccaagat |
105 |
Q |
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| T |
31047073 |
tatgtatgatgttcagtttcgttcaattttaaaaaagaaatccaagat |
31047026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 241 - 323
Target Start/End: Original strand, 31040317 - 31040399
Alignment:
| Q |
241 |
tcttgattatttaagtttgtaatgttttaatccacttttgttttgctgatttatttaagatataaatctactctgaaatattt |
323 |
Q |
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| T |
31040317 |
tcttgattaattaagtttgtaattttttaatacacttttgttttgcgtatttattcaagatataaatctattctaaaagattt |
31040399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 31050321 - 31050366
Alignment:
| Q |
241 |
tcttgattatttaagtttgtaatgttttaatccacttttgttttgc |
286 |
Q |
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| T |
31050321 |
tcttgattaattaagtttgtaattttttaatacacttttgttttgc |
31050366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 31024317 - 31024379
Alignment:
| Q |
241 |
tcttgattatttaagtttgtaatgttttaatccacttttgttttgctgatttatttaagatat |
303 |
Q |
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| T |
31024317 |
tcttgattaattaagttagtacttttttaatacacttttgttttgcgtatttacttaagatat |
31024379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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