View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14604_low_8 (Length: 335)
Name: NF14604_low_8
Description: NF14604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14604_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 308
Target Start/End: Original strand, 40375459 - 40375759
Alignment:
| Q |
7 |
cacagaatatacaaactatagttaatattatacaagaaataaaaaatgttcattatttgcaacattgtcacctttaaaggtgtgaaaagataaattatga |
106 |
Q |
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| T |
40375459 |
cacagaatatacaaactatagttaatattatacaataaataaaaaatgttcattatttgcaacattgtcacctttaaaggtgtgaaaagataaattatga |
40375558 |
T |
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| Q |
107 |
gagtttgagaataagagaaagtaaaaaacagtcagactataatagggaaaataaaattaata-ttttttatattggaaattatgtaaaaggtgacataac |
205 |
Q |
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| T |
40375559 |
gagttcgagaataagagaaagtaaaaaacagtcagac--taatagggaaaataaaattaatatttttttatattggaaaatatgtaaaaggtgacataac |
40375656 |
T |
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| Q |
206 |
tttttaactagaatgacttatattgtgggatgaatggagttaataactttttcattagtcctggaaaacatggatcaattggtaacaaaattgaattata |
305 |
Q |
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| T |
40375657 |
tttttaactagaatgacttatattgtgggatgaatggagttaataactttttcattagttccggaaaacatggatcaattggtaacaacattgcattata |
40375756 |
T |
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| Q |
306 |
tat |
308 |
Q |
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| T |
40375757 |
tat |
40375759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 40373948 - 40374165
Alignment:
| Q |
7 |
cacagaatatacaaactatagttaatattatacaagaaataaaaaatgttcattatttgcaacattgtcacctttaaaggtgtgaaaagataaattatga |
106 |
Q |
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| T |
40373948 |
cacagaatatacaaactatagttaatattatacaaaaaataaaaaatgttcattatttgcaacattgtcacctttaaaggtgtgaaaagataaattatga |
40374047 |
T |
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| Q |
107 |
gagtttgagaataagagaaagtaaaaaacagtcagactataatagggaaaataaaattaatatttt-ttatattggaaattatgtaaaaggtgacataac |
205 |
Q |
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| T |
40374048 |
gagttcgagaataagagaaagtaaaaaacagtcagac--taatagggaaaataaaattaatattttcttatattggaaaatatgtaaaaggtgacataac |
40374145 |
T |
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| Q |
206 |
tttttaactagaatgactta |
225 |
Q |
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|||||||||||||||||||| |
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| T |
40374146 |
tttttaactagaatgactta |
40374165 |
T |
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