View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14605_high_17 (Length: 261)

Name: NF14605_high_17
Description: NF14605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14605_high_17
NF14605_high_17
[»] chr4 (12 HSPs)
chr4 (16-243)||(11192468-11192695)
chr4 (17-243)||(11189891-11190117)
chr4 (18-241)||(11179230-11179453)
chr4 (17-207)||(11166215-11166405)
chr4 (16-220)||(11197672-11197875)
chr4 (101-242)||(11160549-11160690)
chr4 (101-175)||(5646597-5646671)
chr4 (101-175)||(11174637-11174711)
chr4 (101-175)||(11182099-11182173)
chr4 (162-241)||(11240855-11240934)
chr4 (17-83)||(11174747-11174813)
chr4 (101-173)||(11932023-11932095)
[»] chr5 (3 HSPs)
chr5 (101-173)||(8991411-8991483)
chr5 (101-173)||(8981906-8981978)
chr5 (112-168)||(36686949-36687005)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 11192468 - 11192695
Alignment:
Q  16 gagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccacttcctaagctcatcagaacttacatcatcagcatgtttcttgcaat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11192468 gagatgagattgaagagagtatcttgatcaacctggacaaactcagcgtcccacttcctaagctcatcagaacttacatcatcagcatgtttcttgcaat 11192567  T
Q  116 attcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgtctggga 215  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  11192568 actcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacagtcatcgtctatcaaaagcttgatcgtctggga 11192667  T
Q  216 ttgcactgccaccacctcttctatttca 243  Q
    ||||| ||||||| ||||||||||||||    
T  11192668 ttgcattgccaccgcctcttctatttca 11192695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 11189891 - 11190117
Alignment:
Q  17 agatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccacttcctaagctcatcagaacttacatcatcagcatgtttcttgcaata 116  Q
    ||||||| || ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  11189891 agatgagtttcaagagagtatcttgatcgacctggacaaattcagcgtcccacttcctaagctcatcagaacttacagcatcaacatgtttcttgcaata 11189990  T
Q  117 ttcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgtctgggat 216  Q
     |||||||||||||||||||||||||  ||||||||||||||||||||| ||||||| |||||||||| |||| | |||||| ||||||||||||| |||    
T  11189991 ctcaataaccatggccaagatcttgcctgttacgttcgaaatagggatttcagtgtcattggcacactggtcgccgatcaaatgcttgatcgtctgcgat 11190090  T
Q  217 tgcactgccaccacctcttctatttca 243  Q
    || ||||||||| ||||||| ||||||    
T  11190091 tgaactgccaccgcctcttcgatttca 11190117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 11179230 - 11179453
Alignment:
Q  18 gatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccacttcctaagctcatcagaacttacatcatcagcatgtttcttgcaatat 117  Q
    |||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||  |||||||||||||||| || ||||| ||||||||||||||||     
T  11179230 gatgagattgaagagagtattttgatcaaccttgacaaattcagcgtcccacttctcaagctcatcagaacttgcagcatcaacatgtttcttgcaatac 11179329  T
Q  118 tcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgtctgggatt 217  Q
    ||||||||||| |||||||||||||  ||||| ||||  | ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  11179330 tcaataaccatagccaagatcttgccagttacattcgttaaagggattccagtgtcgttggcacactcctcgtcgatcaaatgcttgatcgtctgggatt 11179429  T
Q  218 gcactgccaccacctcttctattt 241  Q
    ||| ||||||| ||| ||| ||||    
T  11179430 gcattgccaccgccttttcgattt 11179453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 11166215 - 11166405
Alignment:
Q  17 agatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccacttcctaagctcatcagaacttacatcatcagcatgtttcttgcaata 116  Q
    ||||||| || ||||||||||||||||||| || | |||| |||| ||||||||||  ||| |||||||||||| || ||||| ||||||||||||||||    
T  11166215 agatgagtttcaagagagtatcttgatcaatcttgtcaaattcagcgtcccacttctcaagttcatcagaacttgcagcatcaacatgtttcttgcaata 11166314  T
Q  117 ttcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatc 207  Q
     ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||| |||| ||||||  |||||| ||| ||||    
T  11166315 ctcaataaccatagccaagatcttgccggttacgttcgaaatagggattccaatgtggttggtacacccgtcgtggatcaaatgctcgatc 11166405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 11197672 - 11197875
Alignment:
Q  16 gagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccacttcctaagctcatcagaacttacatcatcagcatgtttcttgcaat 115  Q
    ||||||||| |||| | ||||||||||||||| ||||| || |||| |||||| ||||||||| ||||| |||||  | ||| | |||||||||||||||    
T  11197672 gagatgagactgaacatagtatcttgatcaac-tggacgaattcagcgtcccaattcctaagcccatcataacttttagcattaacatgtttcttgcaat 11197770  T
Q  116 attcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgtctggga 215  Q
    | ||||||| ||| ||||||||||||   |||  ||||||||||| ||||||| | | ||||||||| || | ||  |||||| |||||||||||| |||    
T  11197771 actcaataaacatagccaagatcttgtcagttgtgttcgaaatagtgattccatttttgttggcacattcattgttgatcaaatgcttgatcgtctagga 11197870  T
Q  216 ttgca 220  Q
    |||||    
T  11197871 ttgca 11197875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 242
Target Start/End: Complemental strand, 11160690 - 11160549
Alignment:
Q  101 catgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacactcgtcgtctatcaaaag 200  Q
    |||| ||||||||||  ||||||||||| ||||||||||||| ||| ||||| | || |||||||||| |||||| |||||| | ||| || |||||| |    
T  11160690 catgcttcttgcaatgctcaataaccatagccaagatcttgccggtaacgtttggaagagggattccactgtcgtcggcacaattgtcatcgatcaaatg 11160591  T
Q  201 cttgatcgtctgggattgcactgccaccacctcttctatttc 242  Q
    ||||||||| || ||||  | ||||||| ||| ||| |||||    
T  11160590 cttgatcgtttgagattctaatgccaccgccttttcaatttc 11160549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 5646671 - 5646597
Alignment:
Q  101 catgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgt 175  Q
    |||||||||||||||| ||||| ||||| ||||  |||| |||||||||||| || |||||||||||||||||||    
T  5646671 catgtttcttgcaatactcaattaccatagccagaatctcgctggttacgtttgagatagggattccagtgtcgt 5646597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 11174711 - 11174637
Alignment:
Q  101 catgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgt 175  Q
    |||||||||||||||| || |||||| | |||||||||||||  ||||| |||| ||||||||||||||||||||    
T  11174711 catgtttcttgcaatactcgataaccttagccaagatcttgccagttacattcggaatagggattccagtgtcgt 11174637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 11182173 - 11182099
Alignment:
Q  101 catgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgt 175  Q
    |||||||||||||||| || |||||| | |||||||||||||  ||||| |||| ||||||||||||||||||||    
T  11182173 catgtttcttgcaatactcgataaccttagccaagatcttgccagttacattcggaatagggattccagtgtcgt 11182099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 11240855 - 11240934
Alignment:
Q  162 gattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgtctgggattgcactgccaccacctcttctattt 241  Q
    ||||||| |||||||| |||||||||| || |||||| ||||||| || ||||||| ||  |||||||||||||| ||||    
T  11240855 gattccaatgtcgttgacacactcgtcatcaatcaaatgcttgatagtatgggattccaaagccaccacctcttcaattt 11240934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 11174813 - 11174747
Alignment:
Q  17 agatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccacttcctaagctcatc 83  Q
    ||||||||| |||||| || ||||||||||||||||| || ||||  ||||||||| |||| |||||    
T  11174813 agatgagatcgaagagggtttcttgatcaacctggacgaattcagcatcccacttcttaagttcatc 11174747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 11932023 - 11932095
Alignment:
Q  101 catgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtc 173  Q
    |||| ||||||||||| ||||||||| | ||||||||| | | |||||| |  ||||||||||||| ||||||    
T  11932023 catgcttcttgcaatactcaataaccttcgccaagatcctcccggttacctcagaaatagggattctagtgtc 11932095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 8991483 - 8991411
Alignment:
Q  101 catgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtc 173  Q
    |||| ||||||||||| ||||| ||| | ||||||||||||||||| ||||| | || |||||||||| ||||    
T  8991483 catgcttcttgcaatactcaatcaccttcgccaagatcttgctggtaacgttgggaagagggattccactgtc 8991411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 8981978 - 8981906
Alignment:
Q  101 catgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtc 173  Q
    |||| ||||||||||| ||||| ||| | ||||||||||| ||||| ||||| | || |||||||||| ||||    
T  8981978 catgcttcttgcaatactcaatcaccttcgccaagatcttactggtaacgttgggaagagggattccactgtc 8981906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 36686949 - 36687005
Alignment:
Q  112 caatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattcca 168  Q
    ||||||||||||||| | |||||||| ||||| ||||| || |||| ||||||||||    
T  36686949 caatattcaataacctttgccaagatgttgctagttacatttgaaagagggattcca 36687005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University