View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14605_high_2 (Length: 475)

Name: NF14605_high_2
Description: NF14605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14605_high_2
NF14605_high_2
[»] chr7 (10 HSPs)
chr7 (1-376)||(41861874-41862234)
chr7 (380-462)||(41862306-41862388)
chr7 (390-462)||(3012395-3012467)
chr7 (398-462)||(21688200-21688264)
chr7 (408-463)||(28694016-28694071)
chr7 (390-462)||(38128951-38129023)
chr7 (408-462)||(4843389-4843443)
chr7 (408-462)||(19377480-19377534)
chr7 (390-459)||(814943-815012)
chr7 (392-434)||(3355940-3355982)
[»] chr1 (8 HSPs)
chr1 (380-462)||(6802044-6802126)
chr1 (388-462)||(4642026-4642100)
chr1 (390-462)||(34459194-34459266)
chr1 (390-462)||(49898461-49898533)
chr1 (390-462)||(9527130-9527202)
chr1 (408-462)||(24646138-24646192)
chr1 (408-462)||(24745497-24745551)
chr1 (377-434)||(37575027-37575084)
[»] chr2 (12 HSPs)
chr2 (390-462)||(17249404-17249476)
chr2 (380-434)||(34756825-34756879)
chr2 (390-447)||(12000624-12000681)
chr2 (408-460)||(33909317-33909369)
chr2 (379-462)||(16220987-16221070)
chr2 (408-462)||(25563021-25563075)
chr2 (390-462)||(304082-304154)
chr2 (390-461)||(45444423-45444494)
chr2 (380-434)||(15429312-15429366)
chr2 (408-462)||(17148866-17148920)
chr2 (390-432)||(35531900-35531942)
chr2 (390-462)||(15651293-15651365)
[»] chr5 (11 HSPs)
chr5 (395-462)||(8214615-8214682)
chr5 (390-462)||(15504001-15504073)
chr5 (390-460)||(21069096-21069166)
chr5 (408-462)||(13942744-13942798)
chr5 (380-434)||(39605802-39605856)
chr5 (390-462)||(17192616-17192688)
chr5 (408-462)||(767367-767421)
chr5 (381-434)||(7159519-7159572)
chr5 (390-462)||(16667440-16667512)
chr5 (388-434)||(9738499-9738545)
chr5 (390-462)||(6900819-6900891)
[»] chr6 (3 HSPs)
chr6 (390-462)||(2836158-2836230)
chr6 (408-460)||(34188870-34188922)
chr6 (390-441)||(31188303-31188354)
[»] chr4 (9 HSPs)
chr4 (390-462)||(2521889-2521961)
chr4 (390-462)||(25237662-25237734)
chr4 (408-462)||(49745125-49745179)
chr4 (392-433)||(41955389-41955430)
chr4 (416-461)||(52373825-52373870)
chr4 (390-445)||(8901905-8901960)
chr4 (409-459)||(36947607-36947657)
chr4 (416-462)||(50099926-50099972)
chr4 (392-432)||(31928971-31929011)
[»] chr3 (4 HSPs)
chr3 (390-462)||(33179083-33179154)
chr3 (408-460)||(41358590-41358642)
chr3 (408-459)||(41218347-41218398)
chr3 (390-459)||(53068336-53068405)
[»] chr8 (4 HSPs)
chr8 (416-462)||(13243179-13243225)
chr8 (380-447)||(31500773-31500840)
chr8 (408-462)||(34282873-34282927)
chr8 (390-460)||(39431620-39431690)
[»] scaffold0021 (2 HSPs)
scaffold0021 (399-459)||(112184-112244)
scaffold0021 (408-459)||(109275-109326)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 41861874 - 41862234
Alignment:
Q  1 ctaaatgaaaattttcaaatattgaaagtggatgattcaannnnnnnnnn---aagaaaaaatgatgattcttaagaagggatttcttaattattaggtg 97  Q
    ||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||    
T  41861874 ctaaatgaaaattttcaaatattgaaagtggatgattcaaagaaaaaaaatttaagaaaaaatgatgattcttaagaagggatttcttaattattaggtg 41861973  T
Q  98 aggtagctatatacaagttcttagtnnnnnnnnnnnnnnnnntcttaaggagtgatttattatgcgtactcataagttcataaccaatcaaagagttact 197  Q
    |||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41861974 aggtagctatatacaagttcttagtaaaaaaaattaaaaaaatcttaaggagtgatttattatgcgtactcataagttcataaccaatcaaagagttact 41862073  T
Q  198 cttttagagtaggcattttggatggtctttttagtcagtagcataaatctatcacnnnnnnnnaagggattcatttataacttattaaactacgtcttgt 297  Q
    ||||||||||||||||||||||||               ||||||||||||||||        ||||||||||||||||||||  |||||||||||||||    
T  41862074 cttttagagtaggcattttggatg---------------agcataaatctatcacttttttt-aagggattcatttataactt--taaactacgtcttgt 41862155  T
Q  298 tctaaatctctcactatatcacatagatcataaatcatcgtcatagtgttaacttgtagtacacaccccattctatttc 376  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41862156 tctaaatctctcactatatcacatagatcataaatcatcatcatagtgttaacttgtagtacacaccccattctatttc 41862234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 380 - 462
Target Start/End: Original strand, 41862306 - 41862388
Alignment:
Q  380 ataattgtatatttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41862306 ataattatacatttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcatctgagaacctaaatcct 41862388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 390 - 462
Target Start/End: Complemental strand, 3012467 - 3012395
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||||||||||||||| |||||||| |||||||||||||||| |||| ||||||||||| ||||||| |||||    
T  3012467 atttcctgcggatatatctttcctgcggatcctaaaatcctatggtattacctcacctgggaacctatatcct 3012395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 462
Target Start/End: Complemental strand, 21688264 - 21688200
Alignment:
Q  398 cggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||||||| |||||||| ||||| ||||||||||||||| || ||||||||| ||||||||||||    
T  21688264 cggatatatctttcctgcggatcttaaaatcctaaggtattatctcacctgataacctaaatcct 21688200  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 408 - 463
Target Start/End: Original strand, 28694016 - 28694071
Alignment:
Q  408 tttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcctg 463  Q
    ||||||| |||||||||||||||| |||| ||||||||||| ||||||||||||||    
T  28694016 tttcctgcggatcctaaaatcctatggtattacctcacctgggaacctaaatcctg 28694071  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 462
Target Start/End: Original strand, 38128951 - 38129023
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||||||||  ||||| |||||||| |||||||||||||||| | || | ||||||||| |||||||||||||    
T  38128951 atttcctgcacatatatctttcctgcggatcctaaaatcctatgatattgcctcacctgggaacctaaatcct 38129023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 4843443 - 4843389
Alignment:
Q  408 tttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    ||||||| |||||||||||||| || ||| ||||||||||| |||||||||||||    
T  4843443 tttcctgcggatcctaaaatcccaatgtattacctcacctgggaacctaaatcct 4843389  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 19377534 - 19377480
Alignment:
Q  408 tttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    ||||||| ||||||||||||||||||||| ||||||||||  | |||||||||||    
T  19377534 tttcctgcggatcctaaaatcctaaggtattacctcacctagggacctaaatcct 19377480  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 459
Target Start/End: Original strand, 814943 - 815012
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaat 459  Q
    |||| ||||||||||| ||||| ||  ||||||||||| |||||||| |||||||| || ||||||||||    
T  814943 attttctgcggatatatctttcgtgcagatcctaaaattctaaggtattacctcacttgggaacctaaat 815012  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 434
Target Start/End: Complemental strand, 3355982 - 3355940
Alignment:
Q  392 ttcctgcggatatacctttcctgtggatcctaaaatcctaagg 434  Q
    |||||||||||  |||||||||| |||||||||||||||||||    
T  3355982 ttcctgcggatgcacctttcctgcggatcctaaaatcctaagg 3355940  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 380 - 462
Target Start/End: Original strand, 6802044 - 6802126
Alignment:
Q  380 ataattgtatatttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    ||||||| | ||||||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||||||    
T  6802044 ataattgcacatttcctgcagatatacctttcctgaggatcctaaaatcgtaaggtattacctcacctgggaacctaaatcct 6802126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 388 - 462
Target Start/End: Original strand, 4642026 - 4642100
Alignment:
Q  388 atatttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||   ||||||||||||    
T  4642026 atatttcctgcggatatatctttcctgcggatcctaaaatcctaaggtattacctcacctcgaaacctaaatcct 4642100  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 462
Target Start/End: Complemental strand, 34459266 - 34459194
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    ||||||| | |||||| ||||| || ||||||||||||||||||||| |||||||||||||||| ||||||||    
T  34459266 atttcctacagatatatctttcttgcggatcctaaaatcctaaggtattacctcacctgagaacttaaatcct 34459194  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 462
Target Start/End: Complemental strand, 49898533 - 49898461
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||||||| ||||||| ||||| || ||||||||||||||||||||| ||||||||||  | |||||||||||    
T  49898533 atttcctgtggatatatctttcttgcggatcctaaaatcctaaggtattacctcacctagggacctaaatcct 49898461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 462
Target Start/End: Complemental strand, 9527202 - 9527130
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||||||  ||||||| |||||  | |||||||||||||||||| || ||||||||||| |||||||||||||    
T  9527202 atttcctatggatatatctttctggaggatcctaaaatcctaagatattacctcacctgggaacctaaatcct 9527130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 24646192 - 24646138
Alignment:
Q  408 tttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    ||||||| |||||| ||||||| |||||| ||||||||||| |||||||||||||    
T  24646192 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatcct 24646138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 24745551 - 24745497
Alignment:
Q  408 tttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    ||||||| |||||||||||||||| |||| |||||||||| | ||||||||||||    
T  24745551 tttcctgcggatcctaaaatcctagggtattacctcaccttaaaacctaaatcct 24745497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 434
Target Start/End: Complemental strand, 37575084 - 37575027
Alignment:
Q  377 cgtataattgtatatttcctgcggatatacctttcctgtggatcctaaaatcctaagg 434  Q
    |||||||||| | |||| ||||||||||||||||| || |||| |||||||| |||||    
T  37575084 cgtataattgcacattttctgcggatatacctttcatgcggattctaaaatcataagg 37575027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 390 - 462
Target Start/End: Complemental strand, 17249476 - 17249404
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||||||||||||||| ||||  || ||||||||||||||||||||| |||||||||||||||||||||||||    
T  17249476 atttcctgcggatatatctttaatgcggatcctaaaatcctaaggtattacctcacctgagaacctaaatcct 17249404  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 34756879 - 34756825
Alignment:
Q  380 ataattgtatatttcctgcggatatacctttcctgtggatcctaaaatcctaagg 434  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  34756879 ataattgtacatttcctgcggatatacctttcctgcggatcctaaaatcctaagg 34756825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 390 - 447
Target Start/End: Complemental strand, 12000681 - 12000624
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacct 447  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||    
T  12000681 atttcctgcggatatatctttcctgcggatcctaaaatcctaaggtattacctcacct 12000624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 33909317 - 33909369
Alignment:
Q  408 tttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatc 460  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  33909317 tttcctgtggatcctaaaatcctatggtattacctcacctgagaacctaaatc 33909369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 379 - 462
Target Start/End: Original strand, 16220987 - 16221070
Alignment:
Q  379 tataattgtatatttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||||||| | |||| ||| ||||||||||||||||  |||||||||||||||||||| || |||||||| |||| ||||||||    
T  16220987 tataattgcacattttctgtggatatacctttcctgcagatcctaaaatcctaaggtattatctcacctgggaacttaaatcct 16221070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 25563075 - 25563021
Alignment:
Q  408 tttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  25563075 tttcctgtggatcctaaaatcctatggtattacctcacctgggaacctaaatcct 25563021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 462
Target Start/End: Original strand, 304082 - 304154
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||||||||||||||| |||||||| ||||||||||||| || |||  |||||||| || |||||||||||||    
T  304082 atttcctgcggatatatctttcctgcggatcctaaaatcttatggtgttacctcacatgggaacctaaatcct 304154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 390 - 461
Target Start/End: Original strand, 45444423 - 45444494
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcc 461  Q
    ||||||||  |||||| ||||| ||  ||||||||||||||| |||| ||||||||||| ||||||||||||    
T  45444423 atttcctgtagatatatctttcttgcagatcctaaaatcctatggtattacctcacctgtgaacctaaatcc 45444494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 15429366 - 15429312
Alignment:
Q  380 ataattgtatatttcctgcggatatacctttcctgtggatcctaaaatcctaagg 434  Q
    ||||||| | ||||||||||||||||||||||||||||||  ||||||| |||||    
T  15429366 ataattgcacatttcctgcggatatacctttcctgtggatattaaaatcttaagg 15429312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 17148920 - 17148866
Alignment:
Q  408 tttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    ||||||| |||||||||||||||| |||| | ||||||||| |||||||||||||    
T  17148920 tttcctgcggatcctaaaatcctatggtattccctcacctgggaacctaaatcct 17148866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 432
Target Start/End: Complemental strand, 35531942 - 35531900
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaa 432  Q
    |||||||||||||||| |||||||| |||||||||||||||||    
T  35531942 atttcctgcggatataactttcctgcggatcctaaaatcctaa 35531900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 462
Target Start/End: Complemental strand, 15651365 - 15651293
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||||||| ||||||| |||||||   |||||||||||||||||| | ||||||||||  | |||||||||||    
T  15651365 atttcctggggatatatctttcctactgatcctaaaatcctaaggcattacctcacctagggacctaaatcct 15651293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 395 - 462
Target Start/End: Original strand, 8214615 - 8214682
Alignment:
Q  395 ctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    ||||||||||| |||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||    
T  8214615 ctgcggatatatctttcctgcggatcctaaaatcctaaagtattacctcacctaagaacctaaatcct 8214682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 462
Target Start/End: Complemental strand, 15504073 - 15504001
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||||||||||||||| |||||| | |||||||||||||||| |||| ||||||| ||| |||||||||||||    
T  15504073 atttcctgcggatatatctttcccgcggatcctaaaatcctatggtattacctcatctgggaacctaaatcct 15504001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 390 - 460
Target Start/End: Complemental strand, 21069166 - 21069096
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatc 460  Q
    ||||||||| |||||| ||||||||||||||||||||||||| ||||  |||||||||  |||||||||||    
T  21069166 atttcctgcagatatatctttcctgtggatcctaaaatcctatggtataacctcacctaggaacctaaatc 21069096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 408 - 462
Target Start/End: Original strand, 13942744 - 13942798
Alignment:
Q  408 tttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    ||||||| ||||||||||||||||||||| |||||||||||| || |||||||||    
T  13942744 tttcctgcggatcctaaaatcctaaggtattacctcacctgataatctaaatcct 13942798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 39605802 - 39605856
Alignment:
Q  380 ataattgtatatttcctgcggatatacctttcctgtggatcctaaaatcctaagg 434  Q
    ||||||| | |||||||||||||||| |||||||| |||||||||||||||||||    
T  39605802 ataattgcacatttcctgcggatatatctttcctgcggatcctaaaatcctaagg 39605856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 462
Target Start/End: Original strand, 17192616 - 17192688
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||| ||||| ||||| |||||||| |||||||||||||| | |||| ||||||| ||| |||||||||||||    
T  17192616 attttctgcgaatatatctttcctgcggatcctaaaatccaatggtattacctcatctgggaacctaaatcct 17192688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 767421 - 767367
Alignment:
Q  408 tttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||||||  |||||||||||||||||||| ||||||||||| ||| |||||||||    
T  767421 tttcctgcagatcctaaaatcctaaggtattacctcacctgggaatctaaatcct 767367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 7159519 - 7159572
Alignment:
Q  381 taattgtatatttcctgcggatatacctttcctgtggatcctaaaatcctaagg 434  Q
    |||||| | ||||| ||||||||||||||| ||| |||||||||||||||||||    
T  7159519 taattgcacatttcatgcggatataccttttctgcggatcctaaaatcctaagg 7159572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 462
Target Start/End: Original strand, 16667440 - 16667512
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||||||||| ||  | ||||| || |||||||||||||||| |||| |||||||| || |||||||||||||    
T  16667440 atttcctgcgaattaatctttcttgcggatcctaaaatcctatggtattacctcacatgggaacctaaatcct 16667512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 434
Target Start/End: Complemental strand, 9738545 - 9738499
Alignment:
Q  388 atatttcctgcggatatacctttcctgtggatcctaaaatcctaagg 434  Q
    |||||| |||||||||||||| || || |||||||||||||||||||    
T  9738545 atattttctgcggatatacctatcatgcggatcctaaaatcctaagg 9738499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 462
Target Start/End: Complemental strand, 6900891 - 6900819
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    ||||| |||||||||| |||||| | |||||||||||||||||  || || || | ||| |||||||||||||    
T  6900891 atttcttgcggatatatctttcccgcggatcctaaaatcctaaaatattatctaatctgggaacctaaatcct 6900819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 462
Target Start/End: Original strand, 2836158 - 2836230
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    ||||||||  ||||||| ||||||| |||||||||||||||| |||| ||||||||||| |||||||||||||    
T  2836158 atttcctgtcgatatacttttcctgcggatcctaaaatcctatggtattacctcacctgggaacctaaatcct 2836230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 460
Target Start/End: Complemental strand, 34188922 - 34188870
Alignment:
Q  408 tttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatc 460  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||| |||||||    
T  34188922 tttcctgcggatcctaaaatcctaaggtattacttcacctgagaatctaaatc 34188870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 441
Target Start/End: Original strand, 31188303 - 31188354
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacc 441  Q
    |||| ||| ||||||| |||||||| ||||||||||||||||||||| ||||    
T  31188303 attttctgaggatatatctttcctgcggatcctaaaatcctaaggtattacc 31188354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 462
Target Start/End: Original strand, 2521889 - 2521961
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||| ||||||||||  |||||||| |||||||||||||||||| || ||||||||||| |||||||||||||    
T  2521889 attttctgcggatatgtctttcctgcggatcctaaaatcctaagatattacctcacctgggaacctaaatcct 2521961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 462
Target Start/End: Complemental strand, 25237734 - 25237662
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||||||||||||| | |||||||| | ||||||||||| ||||||| ||||||||||| |||||||||||||    
T  25237734 atttcctgcggatacatctttcctgcgaatcctaaaatcataaggtattacctcacctgggaacctaaatcct 25237662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 49745179 - 49745125
Alignment:
Q  408 tttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    ||||||| ||||||||||||||||||||| ||||||||||  |||||||||||||    
T  49745179 tttcctgcggatcctaaaatcctaaggtattacctcacctaggaacctaaatcct 49745125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 433
Target Start/End: Complemental strand, 41955430 - 41955389
Alignment:
Q  392 ttcctgcggatatacctttcctgtggatcctaaaatcctaag 433  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  41955430 ttcctgcggatatacctttcttgtggatcctaaaatcctaag 41955389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 461
Target Start/End: Complemental strand, 52373870 - 52373825
Alignment:
Q  416 ggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcc 461  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||    
T  52373870 ggatcctaaaatcctaaggtattacctcacctgggaacctaaatcc 52373825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 390 - 445
Target Start/End: Complemental strand, 8901960 - 8901905
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcac 445  Q
    |||| |||||||| || |||||| ||||||||||||||||||||||| ||||||||    
T  8901960 atttactgcggatgtatctttcccgtggatcctaaaatcctaaggtattacctcac 8901905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 459
Target Start/End: Complemental strand, 36947657 - 36947607
Alignment:
Q  409 ttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaat 459  Q
    |||||| ||||||||||||||||||||| |||| |||||| ||||||||||    
T  36947657 ttcctgcggatcctaaaatcctaaggtattaccacacctgggaacctaaat 36947607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 462
Target Start/End: Complemental strand, 50099972 - 50099926
Alignment:
Q  416 ggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    ||||||||||||||||||||| ||| ||||||| |||||||||||||    
T  50099972 ggatcctaaaatcctaaggtattacttcacctgggaacctaaatcct 50099926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 31928971 - 31929011
Alignment:
Q  392 ttcctgcggatatacctttcctgtggatcctaaaatcctaa 432  Q
    |||| ||||||||||||||||||  ||||||||||||||||    
T  31928971 ttcccgcggatatacctttcctgcagatcctaaaatcctaa 31929011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 462
Target Start/End: Original strand, 33179083 - 33179154
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    |||| ||||||||||| |||||||| | |||||||||||||| |||| ||||||||||| |||||||||||||    
T  33179083 attttctgcggatatatctttcctgcg-atcctaaaatcctatggtattacctcacctgggaacctaaatcct 33179154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 41358590 - 41358642
Alignment:
Q  408 tttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatc 460  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||||||||||    
T  41358590 tttcctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatc 41358642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 408 - 459
Target Start/End: Original strand, 41218347 - 41218398
Alignment:
Q  408 tttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaat 459  Q
    ||||||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  41218347 tttcctgcggatcctaaaatcctaaggtattacctcacatgagaacctaaat 41218398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 459
Target Start/End: Complemental strand, 53068405 - 53068336
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaat 459  Q
    |||| |||||||||||  ||| ||| | ||||||||||||||||||| || |||||||  ||||||||||    
T  53068405 attttctgcggatatatttttactgcgaatcctaaaatcctaaggtattatctcacctaggaacctaaat 53068336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 416 - 462
Target Start/End: Complemental strand, 13243225 - 13243179
Alignment:
Q  416 ggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||    
T  13243225 ggatcctaaaatcctaaggtattacctcacctgggaacctaaatcct 13243179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 447
Target Start/End: Original strand, 31500773 - 31500840
Alignment:
Q  380 ataattgtatatttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacct 447  Q
    |||||| || ||||||| || ||||| ||||||   ||||||||||||||||||||| ||||||||||    
T  31500773 ataattttacatttcctacgtatatatctttccaacggatcctaaaatcctaaggtattacctcacct 31500840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 462
Target Start/End: Original strand, 34282873 - 34282927
Alignment:
Q  408 tttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatcct 462  Q
    ||||||| |||||||||||||||| |||| ||||||||||  |||| ||||||||    
T  34282873 tttcctgcggatcctaaaatcctatggtattacctcacctcggaacttaaatcct 34282927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 460
Target Start/End: Original strand, 39431620 - 39431690
Alignment:
Q  390 atttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaatc 460  Q
    ||||| |||||||||| ||||| || || ||| ||||||||| |||| ||||||||||  |||||||||||    
T  39431620 atttcatgcggatatatctttcttgcgggtccgaaaatcctatggtattacctcacctaggaacctaaatc 39431690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 459
Target Start/End: Original strand, 112184 - 112244
Alignment:
Q  399 ggatatacctttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaat 459  Q
    ||||||| |||||||| |||||||||||||||| |||| ||||||| ||| ||||||||||    
T  112184 ggatatatctttcctgcggatcctaaaatcctatggtattacctcatctgggaacctaaat 112244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 408 - 459
Target Start/End: Original strand, 109275 - 109326
Alignment:
Q  408 tttcctgtggatcctaaaatcctaaggtaatacctcacctgagaacctaaat 459  Q
    |||||||||||||||||||||||| |||| || |||||||| ||||||||||    
T  109275 tttcctgtggatcctaaaatcctatggtattatctcacctgggaacctaaat 109326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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