View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14605_high_3 (Length: 435)
Name: NF14605_high_3
Description: NF14605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14605_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Original strand, 13465136 - 13465536
Alignment:
| Q |
19 |
atagtggttaatgagcattatgctattatgatgccaaaagggttaccactagaaggtgcagctccattgctatgtgctggatcaacagtttatagtccaa |
118 |
Q |
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| T |
13465136 |
atagtggttaatgagcattttgctattatgatgccaaaagggttaccactagaaggtgcagctccattgctatgtgctggatcaacagtttatagtccaa |
13465235 |
T |
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| Q |
119 |
tgatgcgtcatggactgtgtcaaagtggacaacatttaggtgtagttgggttaggtggacttggtcatgttgcagtcaagtttgctaaggctttcaaaat |
218 |
Q |
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| T |
13465236 |
tgatgcatcatggactgtgtcaaagtggacaacatttaggtgtagttgggttaggtggacttggtcatgttgcagtcaagtttgctaaggctttcaaaat |
13465335 |
T |
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| Q |
219 |
gaaagtcactgtgataagtacttctcccggaaagaaagaggaagctttggaaaggcttggtgctgattcattcttgctcatgaatgatcaacaacaattg |
318 |
Q |
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| T |
13465336 |
gaaagtcactgtgataagtacttctcctggaaagaaagaagaagctttggaaaggcttggtgctgattcattcttgctcatgaatgatcaacaacaattg |
13465435 |
T |
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| Q |
319 |
caggtaattaattaaagaagtattaccaattaaacaaggttccattttgagaaaataattttgttaaataatgaactacattaaggtctaagcatgtttc |
418 |
Q |
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| T |
13465436 |
caggtaattaattaaagaagtattaccaattaaacaaggttccattttgagaaaataattttgttaaataatgaactacattaaggtctaagcatgtttc |
13465535 |
T |
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| Q |
419 |
t |
419 |
Q |
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| T |
13465536 |
t |
13465536 |
T |
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