View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14605_high_6 (Length: 402)
Name: NF14605_high_6
Description: NF14605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14605_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 12608162 - 12607985
Alignment:
| Q |
1 |
aaggaaggtaagctagaatgcaggcaaggaagggtgcaccaacaactcaaactcagatacttgaattgtatatcgttgaatcgtcaaaactcaaaagcct |
100 |
Q |
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| T |
12608162 |
aaggaaggtaagctagaatgcagccaaggaagggtgcaccaacaactcaaactcagatactcgaattgtatatccttgaatcgtcaaaactcaaaagcct |
12608063 |
T |
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| Q |
101 |
ctaaatgtttgcagtgaaaacttctctgtagactaaaatacccaataaagctgaacagcctaataaaaccatactcta |
178 |
Q |
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| T |
12608062 |
ctaaatgtttgcagtgaaaacttctctgtagagtaaaatactcaataaagctgaacagcctaataaaaccatactcta |
12607985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 183 - 332
Target Start/End: Complemental strand, 12607732 - 12607583
Alignment:
| Q |
183 |
gcaaccataattgatcaagccgaacgtatagaactcaagtagctatttggccaaatacgtccgacaggctagaggtgttggccagaggggaggggaagaa |
282 |
Q |
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| T |
12607732 |
gcaaccataattgatcaagtcgaacgtagagaactcaagtagctatttggccaaatacgtccgacaggctagaggtgttggccaaagaggaggggaagaa |
12607633 |
T |
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| Q |
283 |
agatgtgagggctcagaagcatgttagttagacacataagaaacagaatt |
332 |
Q |
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| T |
12607632 |
agatgtgggggctcagaagcatgttagttagacacataagaaacagaatt |
12607583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 12607473 - 12607445
Alignment:
| Q |
358 |
acacatttgcatctcttcactgtttctat |
386 |
Q |
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| T |
12607473 |
acacatttgcatctcttcactgtttctat |
12607445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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