View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14605_low_11 (Length: 371)
Name: NF14605_low_11
Description: NF14605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14605_low_11 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 371
Target Start/End: Original strand, 7928309 - 7928662
Alignment:
| Q |
3 |
agtttgagaaacgtagattaagttttagaggagtgtcaaatctaatcaaatgaaaatgaaaatgaaaatgtaagtgaagtatttgtatgaggttgctagt |
102 |
Q |
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| T |
7928309 |
agtttgagaaacgtagattaagttttagaggagtgtcaaatctaatcaaat------------gaaaatgtaagtgaagtatttgtatgaggttgctggt |
7928396 |
T |
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| Q |
103 |
gagaataaaaatatgaaactgttggacaagcgtgtgtaagtttgttaggtttctattagaagcttaaaagcgtggcaaaattttttgtattacactgatt |
202 |
Q |
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| T |
7928397 |
gagaataaaaatatgaagctgtcggacaagcgtgtgtaagtttgttaggtttctattagaggcttaaaagcgtggcaaaaaatttggtactacactaatt |
7928496 |
T |
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| Q |
203 |
ttgttcaagcaaatttg-aaaatcctaaaaataagttataatttgtctcattttattgttttctatcattattaattccctacnnnnnnnnnnnnnnnnn |
301 |
Q |
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| T |
7928497 |
ttgttcaagcaaatttgaaaaatcctaaaaataagttataatttgtctaattttattgttttccatcattattaatttcctac----aaaaaatctaaaa |
7928592 |
T |
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| Q |
302 |
nnggacttaaaataagatttgttttatcaagattgatccgaagcatagacaataacattctcgaaccttt |
371 |
Q |
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| T |
7928593 |
aaggacttaaaatgagatttgttttatcaagattgatccgaagcatagacaataacattctcgaaccttt |
7928662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 32047556 - 32047615
Alignment:
| Q |
304 |
ggacttaaaataagatttgttttatcaagattgatccgaagcatagacaataacattctc |
363 |
Q |
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| T |
32047556 |
ggacttaaaacaagatttgttttgtcgagaatgatctcaagcatagaccataacattctc |
32047615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 24929726 - 24929769
Alignment:
| Q |
220 |
aaaatcctaaaaataagttataatttgtctcattttattgtttt |
263 |
Q |
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| T |
24929726 |
aaaatcctaaaaataagtgataatttgtctaatttcattgtttt |
24929769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 24930262 - 24930203
Alignment:
| Q |
220 |
aaaatcctaaaaataagttataatttgtctcattttattg-ttttctatcattattaatt |
278 |
Q |
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| T |
24930262 |
aaaatcctaaaaataagtgataatttgtttaatttcattgtttttccatcattattaatt |
24930203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 25679281 - 25679340
Alignment:
| Q |
220 |
aaaatcctaaaaataagttataatttgtctcattttattg-ttttctatcattattaatt |
278 |
Q |
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| T |
25679281 |
aaaatcctaaaaataagtgataatttgtttaatttcattgtttttccatcattattaatt |
25679340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 25679821 - 25679762
Alignment:
| Q |
220 |
aaaatcctaaaaataagttataatttgtctcattttattgttttct-atcattattaatt |
278 |
Q |
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| T |
25679821 |
aaaatcctaaaaataagtgataatttgtttaatttcattgttttttcatcattattaatt |
25679762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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