View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14605_low_14 (Length: 344)
Name: NF14605_low_14
Description: NF14605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14605_low_14 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 738762 - 739081
Alignment:
| Q |
19 |
tgtgtcacacgcatcacattgtggaattgagaattgtattcaaaaactggtgaaacaaattaccaaannnnnnnnnnnnnnnnnnnnnnncactttcacc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
738762 |
tgtgtcacacgcatcacattgtggaattgagaattgtattcaaaaactggtgaaacaaattaccaaattttttagttcttttctttttttcactttcacc |
738861 |
T |
|
| Q |
119 |
cggccatgaacataataacaaaacatatatacctaaatgcctcttagaaatactttaaattgtggccgtaacataacgattttagaggtcaaataaattg |
218 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
738862 |
c----atgaacataataacaaaacatatatacctaaatgcctcttagaaatagtttaaattgtggccgtaacataacgattttagaggtcaaataaattg |
738957 |
T |
|
| Q |
219 |
caattacggtcagatataagccgcatttgcctgcattttaccgcaatttaaaacagatatatttggagtgaggggaacttactgatagtgtcgccgattt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
738958 |
caattacggtcagatataagccgcatttgcctgcattttaccgcaatttaaaacag--atatttggagtgaggggaacttaccgatagtgtcgccgattt |
739055 |
T |
|
| Q |
319 |
ggaagttcttagtagcagcccatttc |
344 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
739056 |
ggaagttcttagtagcagcccatttc |
739081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 47218922 - 47218874
Alignment:
| Q |
295 |
acttactgatagtgtcgccgatttggaagttcttagtagcagcccattt |
343 |
Q |
| |
|
||||||| |||||||| || | |||||||||||| |||||||||||||| |
|
|
| T |
47218922 |
acttactaatagtgtcaccaagttggaagttcttggtagcagcccattt |
47218874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University