View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14605_low_16 (Length: 327)

Name: NF14605_low_16
Description: NF14605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14605_low_16
NF14605_low_16
[»] chr3 (4 HSPs)
chr3 (14-327)||(33328141-33328456)
chr3 (97-177)||(36326512-36326593)
chr3 (89-162)||(30912069-30912142)
chr3 (127-177)||(14029379-14029430)
[»] chr6 (6 HSPs)
chr6 (89-225)||(4834733-4834865)
chr6 (94-225)||(7415658-7415785)
chr6 (94-177)||(7422666-7422750)
chr6 (89-165)||(33242862-33242938)
chr6 (126-264)||(13886592-13886724)
chr6 (94-169)||(7426605-7426680)
[»] chr7 (3 HSPs)
chr7 (89-177)||(42513109-42513198)
chr7 (104-177)||(11206500-11206574)
chr7 (97-177)||(49017149-49017230)
[»] chr5 (3 HSPs)
chr5 (89-170)||(8123542-8123623)
chr5 (98-177)||(41709523-41709603)
chr5 (97-160)||(24108720-24108783)
[»] chr1 (2 HSPs)
chr1 (89-165)||(18583946-18584022)
chr1 (88-177)||(23405522-23405612)
[»] chr8 (3 HSPs)
chr8 (88-264)||(44761980-44762150)
chr8 (104-165)||(14276621-14276683)
chr8 (88-177)||(44765287-44765377)
[»] chr4 (2 HSPs)
chr4 (104-165)||(24733645-24733706)
chr4 (97-165)||(55322394-55322463)
[»] chr2 (1 HSPs)
chr2 (88-165)||(45327464-45327541)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 33328141 - 33328456
Alignment:
Q  14 ttattctagaagggatctatcaggtatattctattggttagttactaattgctattgt--gtagccattgaacaaatgtatgcataagtctgtataagca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  33328141 ttattctagaagggatctatcaggtatattctattggttagttactaattgctattgtacgtagccattgaacaaatgtatgcataagtctgtataagca 33328240  T
Q  112 ttgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttcttagtttctttctataaattcaattctggagtgggattcctac 211  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||    
T  33328241 ttgtatgctttataattagaaccaatgaaagatataatcaatttcctttcttttttcttagtttctttctataaattcaattatggtgtgggatccctac 33328340  T
Q  212 tcaaattggatcgtcgtattatttggttctttcatttagatctcattcccgctgaatggggttatcaattgagctctcactcttcgacagaaaagaagat 311  Q
    || ||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33328341 tcgaattggatcgttgtattagttggtgctttcatttagatctcattcccgctgaatggggttatcaattgagctctcactattcgacagaaaagaagat 33328440  T
Q  312 gcatacgcgtggatct 327  Q
    ||||| ||||||||||    
T  33328441 gcatatgcgtggatct 33328456  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 36326512 - 36326593
Alignment:
Q  97 aagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 177  Q
    |||||| ||||||||||||||||||||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  36326512 aagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttct 36326593  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 30912069 - 30912142
Alignment:
Q  89 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttct 162  Q
    ||||||| |||||| |||||| ||||||||| |||| || ||||||||||||| ||||||| ||||| ||||||    
T  30912069 gtatgcacaagtctatataagtattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttct 30912142  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 14029379 - 14029430
Alignment:
Q  127 ttagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 177  Q
    ||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||    
T  14029379 ttagaatcaatgaaaaatataatgaatttcctttcttttatctctagtttct 14029430  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 4834733 - 4834865
Alignment:
Q  89 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttctttctataaat 187  Q
    |||||||||||||| |||||||||||||||| | || |||||||||||||||| ||||||| ||||| |||||| |||||| ||||||||  || ||       
T  4834733 gtatgcataagtctatataagcattgtatgcctcattattagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctcta--- 4834829  T
Q  188 tcaattctggagtgggattcctactcaaattggatcgt 225  Q
      |||||||||||| ||| |||||||||||||| ||||    
T  4834830 --aattctggagtgtgatccctactcaaattgggtcgt 4834865  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 225
Target Start/End: Original strand, 7415658 - 7415785
Alignment:
Q  94 cataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttctttctataaattcaat 192  Q
    ||||||||| |||||||||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| |||||| |||||||| ||| ||     | |    
T  7415658 cataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctctctcta-----att 7415752  T
Q  193 tctggagtgggattcctactcaaattggatcgt 225  Q
    ||||||||| ||| ||||||||| |||||||||    
T  7415753 tctggagtgtgatccctactcaagttggatcgt 7415785  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 7422666 - 7422750
Alignment:
Q  94 cataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 177  Q
    ||||||||| |||||||||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  7422666 cataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttct 7422750  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 33242862 - 33242938
Alignment:
Q  89 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttctttt 165  Q
    ||||||| |||||| |||||||||||||||| |||| || ||||||||||||| ||||||| |||||| ||||||||    
T  33242862 gtatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaatttcttttctttt 33242938  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 264
Target Start/End: Original strand, 13886592 - 13886724
Alignment:
Q  126 attagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttctttctataaattcaattctggagtgggattcctactcaaattggatcg 224  Q
    |||||||||||||||| ||||||| ||||| |||||| |||||| ||||||||  || ||     |||||||||||| ||| ||||||||||||||   |    
T  13886592 attagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctcta-----aattctggagtgtgatccctactcaaattgg---g 13886683  T
Q  225 tcgtattatttggttctttcatt-tagatctcattcccgct 264  Q
    |||||| ||||||| |||||||| | |||||||||||||||    
T  13886684 tcgtatcatttggtgctttcattctcgatctcattcccgct 13886724  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 7426605 - 7426680
Alignment:
Q  94 cataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct 169  Q
    ||||||||| ||||| |||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| ||||||    
T  7426605 cataagtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttct 7426680  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 42513198 - 42513109
Alignment:
Q  89 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 177  Q
    ||||||| |||||| ||||||||||||||||||||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  42513198 gtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttct 42513109  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 11206500 - 11206574
Alignment:
Q  104 tataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 177  Q
    ||||| |||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  11206500 tataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttct 11206574  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 49017149 - 49017230
Alignment:
Q  97 aagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 177  Q
    |||| |||||||||||||||||| |||| || ||| | ||||||| |||||||  |||| ||||||||| ||| ||||||||    
T  49017149 aagtttgtataagcattgtatgccttattatgagacttaatgaaaaatataatatattttctttcttttatctctagtttct 49017230  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 8123542 - 8123623
Alignment:
Q  89 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttctt 170  Q
    ||||||| |||||| ||||||||||||||||||||| || ||||||||||||| ||||||| ||||| |||||| |||||||    
T  8123542 gtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttctcttttctt 8123623  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 41709523 - 41709603
Alignment:
Q  98 agtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 177  Q
    ||||| ||||| |||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  41709523 agtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctatagtttct 41709603  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 24108720 - 24108783
Alignment:
Q  97 aagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttccttt 160  Q
    |||||| |||||||||||||||  |||| ||||||| |||||||| ||||||| ||||||||||    
T  24108720 aagtctatataagcattgtatgtcttatgattagaaccaatgaaaaatataatgaatttccttt 24108783  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 18584022 - 18583946
Alignment:
Q  89 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttctttt 165  Q
    ||||||| |||||| ||||||||||||||||||||| || ||||||||||||| ||||| | |||||||||||||||    
T  18584022 gtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatatactgaatttcctttctttt 18583946  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 23405612 - 23405522
Alignment:
Q  88 tgtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 177  Q
    |||||||| |||||| | ||| |||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  23405612 tgtatgcacaagtctatctaaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttct 23405522  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 264
Target Start/End: Original strand, 44761980 - 44762150
Alignment:
Q  88 tgtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttctttctataaa 186  Q
    |||||||| |||||| ||||| |||||||||| |||| || | ||||||||||| ||||||| |||||  ||||| |||||| ||||||||  || ||      
T  44761980 tgtatgcacaagtctatataaacattgtatgccttattatgaaaatcaatgaaaaatataatgaattttttttctcttttctatagtttctccctcta-- 44762077  T
Q  187 ttcaattctggagtgggattcctactcaaattggatcgtcgtattatttggttctttcatt-tagatctcattcccgct 264  Q
       |||||||||||| ||| ||||||| ||||||   ||||||| ||||||| |||||||| | |||||||||||||||    
T  44762078 ---aattctggagtgtgatccctactcgaattgg---gtcgtatcatttggtgctttcattctcgatctcattcccgct 44762150  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 14276683 - 14276621
Alignment:
Q  104 tataagcattgta-tgctttataattagaatcaatgaaagatataatcaatttcctttctttt 165  Q
    ||||||||||||| ||||| || |||| ||||||||||| |||||||||||||||||||||||    
T  14276683 tataagcattgtaatgcttcatgattaaaatcaatgaaaaatataatcaatttcctttctttt 14276621  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 44765287 - 44765377
Alignment:
Q  88 tgtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 177  Q
    |||||||| |||||| ||||| |||||||| | |||| || | ||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  44765287 tgtatgcacaagtctatataaacattgtattccttattatgaaaatcaatgaaaaatataatgaattttctttctcttttctatagtttct 44765377  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 24733645 - 24733706
Alignment:
Q  104 tataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttctttt 165  Q
    ||||||||||||||| || || |||||||  ||||||| ||||||| |||||||||||||||    
T  24733645 tataagcattgtatgtttcatgattagaaggaatgaaaaatataatgaatttcctttctttt 24733706  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 55322463 - 55322394
Alignment:
Q  97 aagtctgtataagcattgtatgctttataattagaatcaatgaaagat-ataatcaatttcctttctttt 165  Q
    |||||| |||||||||||||||| | || ||||| || ||||||| || ||||| |||||||||||||||    
T  55322463 aagtctatataagcattgtatgcctcattattaggatgaatgaaaaataataatgaatttcctttctttt 55322394  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 45327541 - 45327464
Alignment:
Q  88 tgtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttctttt 165  Q
    |||||||| |||||| |||||||||||||||  |||| || ||||  ||||||| ||||||| |||||| ||||||||    
T  45327541 tgtatgcacaagtctatataagcattgtatgtcttattatgagaaaaaatgaaaaatataataaatttcttttctttt 45327464  T

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