View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14605_low_18 (Length: 297)
Name: NF14605_low_18
Description: NF14605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14605_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 81 - 283
Target Start/End: Complemental strand, 52716092 - 52715890
Alignment:
| Q |
81 |
ctcattttacttcaccactccaattcaaaatttatgaataccctttctcaaatttggttttgattcaaagagaaaacgtaatccatggtttgtaatggct |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52716092 |
ctcattttacttcaccactccaattcaaaatttatgaataccctttctcagatttggttttgattcaaagagaaaacgtaatccatggtttgtaatggca |
52715993 |
T |
|
| Q |
181 |
gtaaaaggaattgagtttcagtaacccttctgtaatatatgaaggatacaaaaattgatggaaaggtgagtatgaatcaaattaatttgataaatgtgaa |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
52715992 |
gtaaaaggaattgagtttcagtaacccttctgtaatatattaaggatacaaaaattgatggaaggatgagtatgaatcaaattaatttgataaatgtgaa |
52715893 |
T |
|
| Q |
281 |
att |
283 |
Q |
| |
|
||| |
|
|
| T |
52715892 |
att |
52715890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 81 - 283
Target Start/End: Original strand, 53343395 - 53343612
Alignment:
| Q |
81 |
ctcattttacttcaccactccaattcaaaatttatgaataccctttctcaaatttggttttgattcaaagagaaaacgtaatccatggtttgtaatggct |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
53343395 |
ctcattttacttcaccactccaattcaaaatttatgaatacgctttctcggatttggttttgattcaaagagaaaacgtaatccatggtttgcaacggca |
53343494 |
T |
|
| Q |
181 |
gtaaaaggaattgagtt-----------tcagtaacccttctg----taatatatgaaggatacaaaaattgatggaaaggtgagtatgaatcaaattaa |
265 |
Q |
| |
|
||||||| ||||||||| |||||||||||| || ||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
53343495 |
gtaaaagaaattgagttgattccataactcagtaacccttatgcatacaatatattaaggatacaaaaattgttggaagggtgagtatgaatcaaattaa |
53343594 |
T |
|
| Q |
266 |
tttgataaatgtgaaatt |
283 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
53343595 |
tttgataaatgtgaaatt |
53343612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 52717584 - 52717477
Alignment:
| Q |
85 |
ttttacttcaccactccaattcaaaatttatgaataccctttctcaaatttggttttgattcaaagagaaaacgtaatccatggtttgtaatggctgtaa |
184 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| |||||||||| ||||||||||||||| ||||||||||| ||| ||| ||||| |||||| ||| |
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| T |
52717584 |
ttttacttcacctctccaattcaaaatctatgaacaccctttctcgaatttggttttgattgaaagagaaaactcaattcatagtttgaaatggcaataa |
52717485 |
T |
|
| Q |
185 |
aaggaatt |
192 |
Q |
| |
|
|||||||| |
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|
| T |
52717484 |
aaggaatt |
52717477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 32558396 - 32558503
Alignment:
| Q |
85 |
ttttacttcaccactccaattcaaaatttatgaataccctttctcaaatttggttttgattcaaagagaaaacgtaatccatggtttgtaatggctgtaa |
184 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||||| ||| ||| ||||| |||| | ||| |
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|
| T |
32558396 |
ttttacttcacccctccaattcaaaatctatgaacaccctttctcggatttggttttgattgaaagagaaaactcaattcatagtttgaaatgacaataa |
32558495 |
T |
|
| Q |
185 |
aaggaatt |
192 |
Q |
| |
|
|||||||| |
|
|
| T |
32558496 |
aaggaatt |
32558503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 7050574 - 7050679
Alignment:
| Q |
85 |
ttttacttcaccactccaattcaaaatttatgaataccctttctcaaatttggttttgattcaaagagaaaacgtaatccatggtttgtaatggctgtaa |
184 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| || ||||||| ||||||||||||| ||||||||||| ||| ||| |||| |||||| ||| |
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|
| T |
7050574 |
ttttacttcacccctccaattcaaaatctatga--acactttctcggatttggttttgatcgaaagagaaaactcaattcatagtttaaaatggcaataa |
7050671 |
T |
|
| Q |
185 |
aaggaatt |
192 |
Q |
| |
|
|||||||| |
|
|
| T |
7050672 |
aaggaatt |
7050679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 81 - 283
Target Start/End: Complemental strand, 40600390 - 40600184
Alignment:
| Q |
81 |
ctcattttacttcaccactccaattcaaaatttatgaataccctttctcaaatttggttttgattcaaagagaaaacgtaatccatggtttgtaatggct |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
40600390 |
ctcattttacttcaccactccaattcaaaatttataaataccctttctcggatttggttttgattcaacgagaaaacgtaatccatggtttgtaatggta |
40600291 |
T |
|
| Q |
181 |
gtaaaaggaattgagtttcagtaacccttctgt----aatatatgaaggatacaaaaattgatggaaaggtgagtatgaatcaaattaatttgataaatg |
276 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
40600290 |
gtaaaaggaattgagtttcaataacccttctgtatacaatatattaaggatacaaaaattgatggaagggtgagtatgaatcaaattaatttgataaatg |
40600191 |
T |
|
| Q |
277 |
tgaaatt |
283 |
Q |
| |
|
||||||| |
|
|
| T |
40600190 |
tgaaatt |
40600184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 81 - 283
Target Start/End: Original strand, 38559265 - 38559482
Alignment:
| Q |
81 |
ctcattttacttcaccactccaattcaaaatttatgaataccctttctcaaatttggttttgattcaaagagaaaacgtaatccatggtttgtaatggct |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
38559265 |
ctcattttacttcaccactccaattcaaaattaatgaataccctttcttggatttggttttgattcaaagagaaaatgtaatccatggtttgtaatggca |
38559364 |
T |
|
| Q |
181 |
gtaaaaggaattgagtt-----------tcagtaacccttctgt----aatatatgaaggatacaaaaattgatggaaaggtgagtatgaatcaaattaa |
265 |
Q |
| |
|
||||||||||||||||| || ||||||||||| | ||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
38559365 |
gtaaaaggaattgagttgattccataactcggtaacccttctatatacaatatattaaggatacaaaaattgttggaagggtgagtatgaatcaaattaa |
38559464 |
T |
|
| Q |
266 |
tttgataaatgtgaaatt |
283 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38559465 |
tttgataaatgtgaaatt |
38559482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 8641772 - 8641665
Alignment:
| Q |
85 |
ttttacttcaccactccaattcaaaatttatgaataccctttctcaaatttggttttgattcaaagagaaaacgtaatccatggtttgtaatggctgtaa |
184 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| |||||||||| ||||||||||||||| ||||||||||| ||| ||| ||||| |||||| ||| |
|
|
| T |
8641772 |
ttttacttcacccctccaattcaaaatctatgaacaccctttctcgaatttggttttgattgaaagagaaaactcaattcatagtttgaaatggcaataa |
8641673 |
T |
|
| Q |
185 |
aaggaatt |
192 |
Q |
| |
|
|||||||| |
|
|
| T |
8641672 |
aaggaatt |
8641665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 45500450 - 45500380
Alignment:
| Q |
86 |
tttacttcaccactccaattcaaaatttatgaataccctttctcaaatttggttttgattcaaagagaaaa |
156 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| ||| ||||||| |||||||||||||||||| |||||| |
|
|
| T |
45500450 |
tttacttcaccactccaattcataatctatgaacaccttttctcatatttggttttgattcaaaaagaaaa |
45500380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 51198957 - 51198892
Alignment:
| Q |
114 |
atgaataccctttctcaaatttggttttgattcaaagagaaaacgtaatccatggtttgtaatggc |
179 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| |
|
|
| T |
51198957 |
atgaacaccctttctcaaatttggttttgattcaaagagaaaatgagatctgtggtttgtaatggc |
51198892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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